Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq12 253 3e-62 seq3 104 3e-17 >seq12 Length=4789767 Score = 253 bits (280), Expect = 3e-62 Identities = 1187/1873 (63%), Gaps = 49/1873 (3%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||| || ||||| || | || | || ||||| || ||||||||||| || || ||| Sbjct 3334009 GTGAACTGGATGGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATTCCGGTCTTAAGA 3334068 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 ||||| |||| ||| |||||||| || || | ||| | |||| ||| ||| Sbjct 3334069 CCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATAGTCGGGTCTTTCATA 3334128 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 ||||| |||| || ||| ||||| |||||||| || | ||| |||||||| | | Sbjct 3334129 TGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCGGCAGCCATCTGGACA 3334188 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 | || |||| |||||||| | ||| || || | || |||||| | || | | Sbjct 3334189 ACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGGGCTTTGATATCTGCGGGGATG 3334248 Query 62286 TTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 62342 |||| | ||||| | ||| || || | || || | ||||| || | ||| | Sbjct 3334249 TTTGGAATGTTCTGGACGGAGCCGTTTTCAGCAATGATACGGTTCTTCATGGCGTCAGAC 3334308 Query 62343 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCA 62402 || || | || | | | | ||||| ||||| || || ||||| || ||| Sbjct 3334309 CACAAGCCCATGTCAACCAGATCCTTTAGGAGCCAAGGGTTGACGACCTGGAACTCGCCA 3334368 Query 62403 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62462 | | ||||| || ||| ||||| || ||||| || | |||| || || ||| Sbjct 3334369 GCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGCTCAAAGCACTCGTTGTTACCC 3334428 Query 62463 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62522 || || || | ||| || || ||||| ||||| || | | ||| || | || || Sbjct 3334429 AAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACTGTTGCGAATGCCA 3334488 Query 62523 TATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNN 62582 | | |||||| || || || | |||| | ||||||||| || || ||| Sbjct 3334489 TGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCAAAGATCGGAAGGCTTCACATTC 3334548 Query 62583 NNNNNNNNATATTGTAGAATACCGT----TACTGGCGTACGATCCTACATATGTATCATA 62638 | | || ||||| || | ||| || | | ||| | ||||| || Sbjct 3334549 CACATGTCAAACTGCAGAATGCCTTGAGATACAGGAG----AGCCTTCGTATGTGGAGTA 3334604 Query 62639 TGGTCCTTCCTTCTCAGCTAGTT---TACAACTCGCCTCTAATGCACCGTAATAAATGGT 62695 ||| |||| || || || || | | || || | || | | ||||| || Sbjct 3334605 TGGGCCTTGCTCCTTGGCAAGCTCCATGGAA---GCAGTGAGAGCGGCATGGTAAATTGT 3334661 Query 62696 TTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG 62755 ||||| |||| ||| || || ||| |||| || || || || || | ||| | Sbjct 3334662 CTCAAATATCTGCTTGTTCAGCTCTCGTGCCTCAGGAGACTCGAAAGGC-AGGCGAAGGG 3334720 Query 62756 A-ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62814 | ||||| || || | || ||||| || | ||| || || || || | | | || Sbjct 3334721 CTAGGAACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCCTGTGGCGCATGTTGC 3334780 Query 62815 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62874 | | | ||||| |||| || || || || | || || || ||||| | |||| | Sbjct 3334781 TGTTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGATCTTATTCAAGTTTCGAA 3334840 Query 62875 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC----TATTACA 62930 ||| |||| | ||||| | ||| || | || ||| | | || || || | || Sbjct 3334841 CAACAACTTCGGTAACATCGTGCAGCTTTTGGAAGTCATAGCAGCCTTCATTGTAGTCCA 3334900 Query 62931 AACATGTT--CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA- 62987 | | | ||| || | || |||| || || ||||| ||||||| | | ||| Sbjct 3334901 CAAAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTCATCGGGGGC-GCAG 3334959 Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 || | || ||||| ||||| ||||| | ||| || || | ||| | || || Sbjct 3334960 TACTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAGATTCTTCTGGTTG 3335019 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 ||||| || || ||||| || || || ||||| || | || |||||| |||| | Sbjct 3335020 CTCTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGGCC 3335079 Query 63108 TCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATA----GAT--TTGT--ATCTC 63158 |||| || || | ||| | | || | ||||| || | || |||| | || Sbjct 3335080 TCTAGGATGGCATACCAAA-GCTTCTGTGCCTTGATGGTCTTGCGACCCTTGTTGAGCTT 3335138 Query 63159 CT--TTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63216 || | || ||||||| |||| | |||||||||| || | | ||| Sbjct 3335139 CTCATACT-TTTCGTAGAGAGCCT---------CGAACTCGTCACCGTAGCAGTCAGCCA 3335188 Query 63217 ATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63276 | |||||||| | |||||||||| | ||| || |||| | | || || |||| Sbjct 3335189 GGCCGGGACATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTCAACACGCTTCA 3335248 Query 63277 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336 | ||||||||||||||||| || || | || ||||| | || | | ||| || || | Sbjct 3335249 TGAAGAGATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGC 3335308 Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396 | |||||| || || | |||| | | | || | |||||| || || | ||| | Sbjct 3335309 CATGGTTCTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGA 3335368 Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456 | || | | | || || || ||||| || || ||||| | || | ||| |||||||| Sbjct 3335369 TTGCGAAAGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGA 3335428 Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTC 63516 | |||| || ||| ||||| | |||||| || | |||||||| || | ||| || | Sbjct 3335429 AGACTCGCAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGTATGAAC 3335488 Query 63517 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576 | ||||||| ||| || || || || || || ||||| || ||||| | || Sbjct 3335489 CGGTGGCACGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCTTGGAGATCATTG 3335548 Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636 | || || | ||||| || ||||| || ||||| ||||| |||||| | ||| | Sbjct 3335549 CACAGGTCTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGA 3335608 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 | || ||||| ||| ||| || |||||||| || | ||| || || || || | Sbjct 3335609 AGCATGAAGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTG 3335668 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 | || | || || | | ||||| || ||||| || || | || | Sbjct 3335669 TGAAAAACTTGCTGGACATCAAGTTGTAGGTTTCAATGACTCGCTCAACATTGTCTCCCC 3335728 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTA 63816 || || || || |||||||| | ||||||||| |||| ||||| || ||| | | Sbjct 3335729 AGATACCGACAGCAACACGCATGATCATGTGCTGGGGTCGCTCAACGATCTTGCCATCAA 3335788 Query 63817 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63876 ||| | | ||||||| | || |||||||| ||||| ||||| | ||| ||||||| Sbjct 3335789 GTTTAAGGAGGTAGGATCTCTCTAAAGTTTTGAAACCGAAATATTGGTAGTTGAAGTCTC 3335848 Query 63877 GTTCGTAAATAAT 63889 | || || | ||| Sbjct 3335849 GGTCATACACAAT 3335861 >seq3 Length=2371949 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| |||||||| || ||||||||||||| || | ||||| || || ||||| Sbjct 2245329 ACAGGCGAAATCAGTATGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAG 2245388 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| ||||||||||| || | ||| || |||||||| || | ||| ||||| Sbjct 2245389 ACCTGGCATGAGGCCACGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 2245448 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAG 33730 ||| ||||| || ||||| ||||||| ||| Sbjct 2245449 GATACCTTCGACGGCAGCGAAGGCAACAAG 2245478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817316582080