Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq12 251 9e-62 seq3 98.7 1e-15 >seq12 Length=4789767 Score = 251 bits (278), Expect = 9e-62 Identities = 1189/1874 (63%), Gaps = 35/1874 (2%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||| || ||||| || | || | || ||||| || ||||||||||| || || ||| Sbjct 3334009 GTGAACTGGATGGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATTCCGGTCTTAAGA 3334068 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 ||||| |||| ||| |||||||| || || | ||| | |||| ||| ||| Sbjct 3334069 CCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATAGTCGGGTCTTTCATA 3334128 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 ||||| |||| || ||| ||||| |||||||| || | ||| |||||||| | | Sbjct 3334129 TGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCGGCAGCCATCTGGACA 3334188 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 | || |||| |||||||| | ||| || || | || |||||| | || | | Sbjct 3334189 ACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGGGCTTTGATATCTGCGGGGATG 3334248 Query 65079 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 |||| | ||||| | ||| || || || || || | ||||| || | ||| | Sbjct 3334249 TTTGGAATGTTCTGGACGGAGCCGTTTTCAGCAATGATACGGTTCTTCATGGCGTCAGAC 3334308 Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195 || || | || | | | | ||||| || || || || || || || ||| Sbjct 3334309 CACAAGCCCATGTCAACCAGATCCTTTAGGAGCCAAGGGTTGACGACCTGGAACTCGCCA 3334368 Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255 | | ||||| || ||| ||||| || ||||| || | |||| || || ||| Sbjct 3334369 GCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGCTCAAAGCACTCGTTGTTACCC 3334428 Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 65315 || || || | ||| || || ||||| ||||| || | | ||| || | || || Sbjct 3334429 AAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACTGTTGCGAATGCCA 3334488 Query 65316 TATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNN 65375 | | |||||| || || || | | |||| | ||||||||| || || || Sbjct 3334489 TGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCAAAGATCGGAAGGCTTCACATTC 3334548 Query 65376 NNNNNNNNNNNTTGTAGAATACCGT----TACTGGCGTACGATCCTACATATGTATCGTA 65431 || ||||| || | ||| || | | ||| | ||||| ||| Sbjct 3334549 CACATGTCAAACTGCAGAATGCCTTGAGATACAGGAG----AGCCTTCGTATGTGGAGTA 3334604 Query 65432 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 65491 ||| |||| || || || || || || | || | | ||||| || || Sbjct 3334605 TGGGCCTTGCTCCTTGGCAAGCTCCATGGAAGCAGTGAGAGCGGCATGGTAAATTGTCTC 3334664 Query 65492 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAGAGA- 65549 || |||| ||| || || ||| |||| || ||| | || || || | ||| | Sbjct 3334665 AAATATCTGCTTGTTCAGCTCTCGTGCCTC-AGGAGACTCGAAAGGC-AGGCGAAGGGCT 3334722 Query 65550 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 65609 | ||||| ||||| | || ||||| || | ||| || || || || | | | || | Sbjct 3334723 AGGAACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCCTGTGGCGCATGTTGCTG 3334782 Query 65610 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACA 65669 | | ||||| |||| || || || || | || || || ||||| | |||| ||| Sbjct 3334783 TTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGATCTTATTCAAGTTTCGAACA 3334842 Query 65670 ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC-GC--TCATC-TATTACAAA 65725 | |||| | ||||| | ||| || | || ||| | | || |||| || | || | Sbjct 3334843 ACAACTTCGGTAACATCGTGCAGCTTTTGGAAGTCATAGCAGCCTTCATTGTAGTCCACA 3334902 Query 65726 CATGTT--CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TA 65782 | | ||| || | || |||| || || ||||| ||||||| | | ||| || Sbjct 3334903 AAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTCATCGGGGGC-GCAGTA 3334961 Query 65783 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 65842 | || ||||| ||||| ||||| | |||||| || | ||| | || || || Sbjct 3334962 CTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAGATTCTTCTGGTTGCT 3335021 Query 65843 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 65902 ||| || || ||||| || || || ||||| || | || |||||| |||| | || Sbjct 3335022 CTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGGCCTC 3335081 Query 65903 TATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTT-TTCTCTT 65960 || || || | ||| | | || | ||||| || | ||| | ||| || | Sbjct 3335082 TAGGATGGCATACCAAA-GCTTCTGTGCCTTGATGGTC---TTGCGACCCTTGTTGAGCT 3335137 Query 65961 TCGTATAGT----GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 66016 || ||| | ||| | | | ||||||||||| || | | ||| || || Sbjct 3335138 TCTCATACTTTTCGTAGAGAGCC--TCGAACTCGTCACCGTAGCAGTCAGCCAGGCCGGG 3335195 Query 66017 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 66076 |||||| | |||||||||| | ||| || |||| | | || || ||||| ||||| Sbjct 3335196 ACATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTCAACACGCTTCATGAAGAG 3335255 Query 66077 ATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 66136 |||||||||||| || || | || | ||| | | | | ||| || || || || Sbjct 3335256 ATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCATGGTT 3335315 Query 66137 CTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCAT 66196 |||| || || | |||| | | | || |||||| || || | ||| || || | Sbjct 3335316 CTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAA 3335375 Query 66197 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 66256 | | || || || ||||| || || ||||| | || | ||| |||||||| | |||| Sbjct 3335376 AGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGAAGACTCG 3335435 Query 66257 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGC 66316 || ||| ||||| | ||| ||||| || |||||||| || | ||| || || | || Sbjct 3335436 CAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGTATGAACCGGTGGC 3335495 Query 66317 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 66376 ||| ||| || || || || || || ||||| || ||||| | ||| || Sbjct 3335496 ACGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCTTGGAGATCATTGCACAGGT 3335555 Query 66377 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 || | || || || |||||||| || || |||||| |||||| | ||| || || Sbjct 3335556 CTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGCATGA 3335615 Query 66437 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 66496 ||||| ||| || || |||||||| || | ||| || || || || || || | Sbjct 3335616 AGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTGTGAAAAA 3335675 Query 66497 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 66556 || || | | ||||| || ||||| || || | || | || || Sbjct 3335676 CTTGCTGGACATCAAGTTGTAGGTTTCAATGACTCGCTCAACATTGTCTCCCCAGATACC 3335735 Query 66557 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 66616 || || |||||||| | ||||||||| |||| |||||||||||| | | ||| | Sbjct 3335736 GACAGCAACACGCATGATCATGTGCTGGGGTCGCTCAACGATCTTGCCATCAAGTTTAAG 3335795 Query 66617 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 66676 | ||||||| | || |||||||| ||||| ||||| | ||| |||||||| || || Sbjct 3335796 GAGGTAGGATCTCTCTAAAGTTTTGAAACCGAAATATTGGTAGTTGAAGTCTCGGTCATA 3335855 Query 66677 AATAATAACCGAGT 66690 | ||| | |||| Sbjct 3335856 CACAATGGCGGAGT 3335869 >seq3 Length=2371949 Score = 98.7 bits (108), Expect = 1e-15 Identities = 290/442 (66%), Gaps = 4/442 (1%) Strand=Plus/Plus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 || ||||| || | || || || ||||| || || || || || | | || || || Sbjct 2245039 TTCTGGTAATCGGCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAGATGTTC 2245098 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAA-AT 35985 |||||||| ||||| || ||| || ||||| | || | | |||| || | Sbjct 2245099 TCCATGAAGTCGAAGGGGTTGGACACCTTATATACCTTCTCGT-TGCCAAGAGCGACCAG 2245157 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATT-TCACAATTCATTCCTATAA 36044 | || ||| || || || || ||||| ||||||| || | ||||| || | || Sbjct 2245158 GAGTCGATCGGCAACGAACTCGATATACTGCTTCATCAGGGTCGCG-TTCATGCCAAGAA 2245216 Query 36045 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 36104 | | ||| |||||| | || || || ||||| ||||| ||| ||||| |||| Sbjct 2245217 GACCACATGGCAGAGCCTCGGTCAGGAACTCTTGCTCAATTTTGACAGCGTCAACGATAA 2245276 Query 36105 TAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 36164 | || || || || ||| ||| | || || || | | ||| |||| Sbjct 2245277 CATCCTGGACCACTTGTTTGCTTGGTCGATTCCTCAAGTGAGAGAATAGGAGACAGGCGA 2245336 Query 36165 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 36224 |||| || ||||||||||||| || | |||||||| || ||||| || |||| Sbjct 2245337 AATCAGTATGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAGACCTGGCA 2245396 Query 36225 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 36284 | ||||||||||| || | ||| || ||||| ||||| | || ||||| || |||| Sbjct 2245397 TGAGGCCACGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCTT 2245456 Query 36285 CTACTGCCGCAAAGGCAATAAG 36306 | || || || ||||||| ||| Sbjct 2245457 CGACGGCAGCGAAGGCAACAAG 2245478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172503822240