Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq12 251 9e-62
seq3 98.7 1e-15
>seq12
Length=4789767
Score = 251 bits (278), Expect = 9e-62
Identities = 1189/1874 (63%), Gaps = 35/1874 (2%)
Strand=Plus/Plus
Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898
||||| || ||||| || | || | || ||||| || ||||||||||| || || |||
Sbjct 3334009 GTGAACTGGATGGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATTCCGGTCTTAAGA 3334068
Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958
||||| |||| ||| |||||||| || || | ||| | |||| ||| |||
Sbjct 3334069 CCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATAGTCGGGTCTTTCATA 3334128
Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018
||||| |||| || ||| ||||| |||||||| || | ||| |||||||| | |
Sbjct 3334129 TGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCGGCAGCCATCTGGACA 3334188
Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078
| || |||| |||||||| | ||| || || | || |||||| | || | |
Sbjct 3334189 ACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGGGCTTTGATATCTGCGGGGATG 3334248
Query 65079 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135
|||| | ||||| | ||| || || || || || | ||||| || | ||| |
Sbjct 3334249 TTTGGAATGTTCTGGACGGAGCCGTTTTCAGCAATGATACGGTTCTTCATGGCGTCAGAC 3334308
Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195
|| || | || | | | | ||||| || || || || || || || |||
Sbjct 3334309 CACAAGCCCATGTCAACCAGATCCTTTAGGAGCCAAGGGTTGACGACCTGGAACTCGCCA 3334368
Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255
| | ||||| || ||| ||||| || ||||| || | |||| || || |||
Sbjct 3334369 GCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGCTCAAAGCACTCGTTGTTACCC 3334428
Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 65315
|| || || | ||| || || ||||| ||||| || | | ||| || | || ||
Sbjct 3334429 AAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACTGTTGCGAATGCCA 3334488
Query 65316 TATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNN 65375
| | |||||| || || || | | |||| | ||||||||| || || ||
Sbjct 3334489 TGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCAAAGATCGGAAGGCTTCACATTC 3334548
Query 65376 NNNNNNNNNNNTTGTAGAATACCGT----TACTGGCGTACGATCCTACATATGTATCGTA 65431
|| ||||| || | ||| || | | ||| | ||||| |||
Sbjct 3334549 CACATGTCAAACTGCAGAATGCCTTGAGATACAGGAG----AGCCTTCGTATGTGGAGTA 3334604
Query 65432 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 65491
||| |||| || || || || || || | || | | ||||| || ||
Sbjct 3334605 TGGGCCTTGCTCCTTGGCAAGCTCCATGGAAGCAGTGAGAGCGGCATGGTAAATTGTCTC 3334664
Query 65492 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAGAGA- 65549
|| |||| ||| || || ||| |||| || ||| | || || || | ||| |
Sbjct 3334665 AAATATCTGCTTGTTCAGCTCTCGTGCCTC-AGGAGACTCGAAAGGC-AGGCGAAGGGCT 3334722
Query 65550 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 65609
| ||||| ||||| | || ||||| || | ||| || || || || | | | || |
Sbjct 3334723 AGGAACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCCTGTGGCGCATGTTGCTG 3334782
Query 65610 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACA 65669
| | ||||| |||| || || || || | || || || ||||| | |||| |||
Sbjct 3334783 TTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGATCTTATTCAAGTTTCGAACA 3334842
Query 65670 ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC-GC--TCATC-TATTACAAA 65725
| |||| | ||||| | ||| || | || ||| | | || |||| || | || |
Sbjct 3334843 ACAACTTCGGTAACATCGTGCAGCTTTTGGAAGTCATAGCAGCCTTCATTGTAGTCCACA 3334902
Query 65726 CATGTT--CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TA 65782
| | ||| || | || |||| || || ||||| ||||||| | | ||| ||
Sbjct 3334903 AAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTCATCGGGGGC-GCAGTA 3334961
Query 65783 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 65842
| || ||||| ||||| ||||| | |||||| || | ||| | || || ||
Sbjct 3334962 CTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAGATTCTTCTGGTTGCT 3335021
Query 65843 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 65902
||| || || ||||| || || || ||||| || | || |||||| |||| | ||
Sbjct 3335022 CTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGGCCTC 3335081
Query 65903 TATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTT-TTCTCTT 65960
|| || || | ||| | | || | ||||| || | ||| | ||| || |
Sbjct 3335082 TAGGATGGCATACCAAA-GCTTCTGTGCCTTGATGGTC---TTGCGACCCTTGTTGAGCT 3335137
Query 65961 TCGTATAGT----GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 66016
|| ||| | ||| | | | ||||||||||| || | | ||| || ||
Sbjct 3335138 TCTCATACTTTTCGTAGAGAGCC--TCGAACTCGTCACCGTAGCAGTCAGCCAGGCCGGG 3335195
Query 66017 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 66076
|||||| | |||||||||| | ||| || |||| | | || || ||||| |||||
Sbjct 3335196 ACATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTCAACACGCTTCATGAAGAG 3335255
Query 66077 ATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 66136
|||||||||||| || || | || | ||| | | | | ||| || || || ||
Sbjct 3335256 ATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCATGGTT 3335315
Query 66137 CTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCAT 66196
|||| || || | |||| | | | || |||||| || || | ||| || || |
Sbjct 3335316 CTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAA 3335375
Query 66197 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 66256
| | || || || ||||| || || ||||| | || | ||| |||||||| | ||||
Sbjct 3335376 AGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGAAGACTCG 3335435
Query 66257 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGC 66316
|| ||| ||||| | ||| ||||| || |||||||| || | ||| || || | ||
Sbjct 3335436 CAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGTATGAACCGGTGGC 3335495
Query 66317 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 66376
||| ||| || || || || || || ||||| || ||||| | ||| ||
Sbjct 3335496 ACGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCTTGGAGATCATTGCACAGGT 3335555
Query 66377 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436
|| | || || || |||||||| || || |||||| |||||| | ||| || ||
Sbjct 3335556 CTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGCATGA 3335615
Query 66437 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 66496
||||| ||| || || |||||||| || | ||| || || || || || || |
Sbjct 3335616 AGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTGTGAAAAA 3335675
Query 66497 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 66556
|| || | | ||||| || ||||| || || | || | || ||
Sbjct 3335676 CTTGCTGGACATCAAGTTGTAGGTTTCAATGACTCGCTCAACATTGTCTCCCCAGATACC 3335735
Query 66557 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 66616
|| || |||||||| | ||||||||| |||| |||||||||||| | | ||| |
Sbjct 3335736 GACAGCAACACGCATGATCATGTGCTGGGGTCGCTCAACGATCTTGCCATCAAGTTTAAG 3335795
Query 66617 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 66676
| ||||||| | || |||||||| ||||| ||||| | ||| |||||||| || ||
Sbjct 3335796 GAGGTAGGATCTCTCTAAAGTTTTGAAACCGAAATATTGGTAGTTGAAGTCTCGGTCATA 3335855
Query 66677 AATAATAACCGAGT 66690
| ||| | ||||
Sbjct 3335856 CACAATGGCGGAGT 3335869
>seq3
Length=2371949
Score = 98.7 bits (108), Expect = 1e-15
Identities = 290/442 (66%), Gaps = 4/442 (1%)
Strand=Plus/Plus
Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926
|| ||||| || | || || || ||||| || || || || || | | || || ||
Sbjct 2245039 TTCTGGTAATCGGCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAGATGTTC 2245098
Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAA-AT 35985
|||||||| ||||| || ||| || ||||| | || | | |||| || |
Sbjct 2245099 TCCATGAAGTCGAAGGGGTTGGACACCTTATATACCTTCTCGT-TGCCAAGAGCGACCAG 2245157
Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATT-TCACAATTCATTCCTATAA 36044
| || ||| || || || || ||||| ||||||| || | ||||| || | ||
Sbjct 2245158 GAGTCGATCGGCAACGAACTCGATATACTGCTTCATCAGGGTCGCG-TTCATGCCAAGAA 2245216
Query 36045 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 36104
| | ||| |||||| | || || || ||||| ||||| ||| ||||| ||||
Sbjct 2245217 GACCACATGGCAGAGCCTCGGTCAGGAACTCTTGCTCAATTTTGACAGCGTCAACGATAA 2245276
Query 36105 TAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 36164
| || || || || ||| ||| | || || || | | ||| ||||
Sbjct 2245277 CATCCTGGACCACTTGTTTGCTTGGTCGATTCCTCAAGTGAGAGAATAGGAGACAGGCGA 2245336
Query 36165 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 36224
|||| || ||||||||||||| || | |||||||| || ||||| || ||||
Sbjct 2245337 AATCAGTATGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAGACCTGGCA 2245396
Query 36225 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 36284
| ||||||||||| || | ||| || ||||| ||||| | || ||||| || ||||
Sbjct 2245397 TGAGGCCACGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCTT 2245456
Query 36285 CTACTGCCGCAAAGGCAATAAG 36306
| || || || ||||||| |||
Sbjct 2245457 CGACGGCAGCGAAGGCAACAAG 2245478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658172503822240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |