Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq12 260 2e-64 seq3 100 4e-16 >seq12 Length=4789767 Score = 260 bits (288), Expect = 2e-64 Identities = 1188/1866 (64%), Gaps = 35/1866 (2%) Strand=Plus/Plus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || ||||| ||||| | | || |||| ||||| || |||||||| || || || ||| Sbjct 3334009 GTGAACTGGATGGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATTCCGGTCTTAAGA 3334068 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919 ||||| |||| ||| |||||||| || || | ||| |||| | || || || Sbjct 3334069 CCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATAG-TCGGGTCTTTCAT 3334127 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 || || |||| |||||| ||||| |||||||| || | ||| |||||||| | | Sbjct 3334128 ATGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCGGCAGCCATCTGGAC 3334187 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039 | || |||| |||||||| | ||| || || | || |||||| | || | Sbjct 3334188 AACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGGGCTTTGATATCTGCGGGGAT 3334247 Query 71040 GTTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 ||||| | ||||| | ||| || || ||||| || | || || || | ||| Sbjct 3334248 GTTTGGAATGTTCTGGACGGAGCCGTTTTCAGCAATGATACGGTTCTTCATGGCGTCAGA 3334307 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 ||| || | || | | | | ||||| ||| || || || || || || || Sbjct 3334308 CCACAAGCCCATGTCAACCAGATCCTTTAGGAGCCAAGGGTTGACGACCTGGAACTCGCC 3334367 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 || | ||||| || ||| ||||| || ||||| || | |||| || || || Sbjct 3334368 AGCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGCTCAAAGCACTCGTTGTTACC 3334427 Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACC 71276 ||| || || | ||| || || ||||| ||||| || | ||||| || | || || Sbjct 3334428 CAAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACTGTTGCGAATGCC 3334487 Query 71277 ATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNN 71336 ||| | ||||| || || || ||| |||| | ||||||||| || || || Sbjct 3334488 ATGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCAAAGATCGGAAGGCTTCACATT 3334547 Query 71337 NNNNNNNNNNNNNNNNNNNATGCCGTTAC-TAGCGTATGATCCTGCATATGTATCGTATG 71395 ||||| | | || | | || ||| | ||||| ||||| Sbjct 3334548 CCACATGTCAAACTGCAGAATGCCTTGAGATACAGGA-GAGCCTTCGTATGTGGAGTATG 3334606 Query 71396 GTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGA 71455 | |||| | | ||| || || || | || ||| ||||| || || | Sbjct 3334607 GGCCTTGCTCCTTGGCAAGCTCCATGGAAGCAGTGAGAGCGGCATGGTAAATTGTCTCAA 3334666 Query 71456 AAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA-ATA 71514 | |||| ||| || || ||| |||| || || || || || | ||| | | Sbjct 3334667 ATATCTGCTTGTTCAGCTCTCGTGCCTCAGGAGACTCGAAAGGC-AGGCGAAGGGCTAGG 3334725 Query 71515 AACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATT 71574 ||||| ||||| | || |||||||| | ||| || || ||||| | | | || | Sbjct 3334726 AACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCCTGTGGCGCATGTTGCTGTTC 3334785 Query 71575 TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATT 71634 | ||||| |||| || || || || | || || || ||||| | |||| || | Sbjct 3334786 TGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGATCTTATTCAAGTTTCGAACAACA 3334845 Query 71635 ACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATC----TATT--ACAAAC 71688 |||| | ||||| | || || | || ||| | | || || || | ||||| Sbjct 3334846 ACTTCGGTAACATCGTGCAGCTTTTGGAAGTCATAGCAGCCTTCATTGTAGTCCACAAAG 3334905 Query 71689 -ACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTG 71747 ||| |||||| | || |||| || || ||||| ||||||| | || || | Sbjct 3334906 GACGG-CAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTCATCGGGGGCGCAGTACTC 3334964 Query 71748 TATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTT 71807 || || || ||||| ||||| | |||||| || | ||| | || || ||||| Sbjct 3334965 GATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAGATTCTTCTGGTTGCTCTT 3335024 Query 71808 TTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTAT 71867 || || ||||| || || || || || || | || |||||| |||| | |||| Sbjct 3335025 GCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGGCCTCTAG 3335084 Query 71868 AATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCT--CTT-T 71923 || || | ||| | | || | ||||| || | |||| | ||| | ||| | Sbjct 3335085 GATGGCATACCAAA-GCTTCTGTGCCTTGATGGT---CTTGCGACCCTTGTTGAGCTTCT 3335140 Query 71924 CGTATTGT--GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAATCCAGGAC 71980 | || | | ||| | | | ||||||||||| || | ||| | | | || |||| Sbjct 3335141 CATACTTTTCGTAGAGAGCC--TCGAACTCGTCACCGTA-GCAGTCAGCCAGGCCGGGAC 3335197 Query 71981 ATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAG 72038 |||| || |||||||||| | ||| || || | || ||| || || ||||| ||||| Sbjct 3335198 ATTCGTTGGGACACATCAGAGTCCAATCGCCGT--TCTTTTCAACACGCTTCATGAAGAG 3335255 Query 72039 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATT 72098 |||||||||||| || || | || ||||| | | | | || || || || || Sbjct 3335256 ATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCATGGTT 3335315 Query 72099 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 72158 |||| || || | |||| | | | || | |||||| || || | ||| || || | Sbjct 3335316 CTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAA 3335375 Query 72159 AACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 72218 | | || || || ||||| || || ||||| | || | ||| |||||||| | |||| Sbjct 3335376 AGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGAAGACTCG 3335435 Query 72219 CAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGC 72278 || ||| ||||| | ||| ||||| | |||||||| || | ||| || || |||| Sbjct 3335436 CAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGTATGAACCGGTGGC 3335495 Query 72279 ACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 72338 ||| ||| | || || || || || || ||||| || ||||| | ||| || Sbjct 3335496 ACGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCTTGGAGATCATTGCACAGGT 3335555 Query 72339 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 || | || || || |||||||| || || |||||| |||||| | ||| || || Sbjct 3335556 CTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGCATGA 3335615 Query 72399 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 72458 ||||| ||| || || |||||||| || | ||| || || || || || || | Sbjct 3335616 AGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTGTGAAAAA 3335675 Query 72459 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCC 72518 || |||| | ||||| || ||||| || || | || | || || Sbjct 3335676 CTTGCTGGACATCAAGTTGTAGGTTTCAATGACTCGCTCAACATTGTCTCCCCAGATACC 3335735 Query 72519 TACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAA 72578 || || |||||||| | ||| ||||| |||| |||||||||||| || | ||| | Sbjct 3335736 GACAGCAACACGCATGATCATGTGCTGGGGTCGCTCAACGATCTTGCCATCAAGTTTAAG 3335795 Query 72579 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 72638 | ||||||| | || |||||||| ||||| ||||| | ||| |||||||| || || Sbjct 3335796 GAGGTAGGATCTCTCTAAAGTTTTGAAACCGAAATATTGGTAGTTGAAGTCTCGGTCATA 3335855 Query 72639 AATAAT 72644 | ||| Sbjct 3335856 CACAAT 3335861 >seq3 Length=2371949 Score = 100 bits (110), Expect = 4e-16 Identities = 293/444 (66%), Gaps = 8/444 (2%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || ||||| || | || || || ||||| || || ||||| || | | || || || Sbjct 2245039 TTCTGGTAATCGGCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAGATGTTC 2245098 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAA-AT 41892 |||||||| || || || |||| || ||||| | || | | |||| || | Sbjct 2245099 TCCATGAAGTCGAAGGGGTTGGACACCTTATATACCTTCTCGT-TGCCAAGAGCGACCAG 2245157 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATT-TCACAATTCATTCCTATAA 41951 | || ||| || | ||| || ||||| ||||||| || | ||||| || | || Sbjct 2245158 GAGTCGATCGGCAACGAACTCGATATACTGCTTCATCAGGGTCGCG-TTCATGCCAAGAA 2245216 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | | ||| |||||| | || || || ||||| ||||| ||| ||||| |||| Sbjct 2245217 GACCACATGGCAGAGCCTCGGTCAGGAACTCTTGCTCAATTTTGACAGCGTCAACGATAA 2245276 Query 42012 TAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGC 42069 | || | || || || || ||| ||| | || || || | | ||| || Sbjct 2245277 CA--TCCTGGACCACTTGTTTGCTTGGTCGATTCCTCAAGTGAGAGAATAGGAGACAGGC 2245334 Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 |||||| || |||||||| |||| || | |||||||| || ||||| || || Sbjct 2245335 GAAATCAGTATGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAGACCTGG 2245394 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCC 42189 ||| ||||||||||| || | ||| || || || ||||| | || |||||||| || Sbjct 2245395 CATGAGGCCACGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACC 2245454 Query 42190 TTCTACTGCCGCAAAGGCAATAAG 42213 ||| || || || ||||||| ||| Sbjct 2245455 TTCGACGGCAGCGAAGGCAACAAG 2245478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138897987360