Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 141 1e-28 seq12 114 2e-20 >seq3 Length=2371949 Score = 141 bits (156), Expect = 1e-28 Identities = 206/283 (73%), Gaps = 6/283 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| ||||| | || ||||| ||||| | || ||| | |||||| Sbjct 2245942 ATTTGGCAAATGTACAAGAAGGCCGAAGCGTCCTTCTGGACCGCTGAGGAGATTGATCTG 2245883 Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 |||||||| || |||||||| | || | | || || ||| | | || || || Sbjct 2245882 TCCAAGGATCTTCACGATTGGAACAACAAGATCAAC-GACGACGAGAAATACTTCATCTC 2245824 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196 ||||||||||||||||| |||| || ||||| ||||||||||| ||||| || || | Sbjct 2245823 ACACATTTTGGCCTTCTTCGCCGCGTCTGATGGCATCGTCAACGAGAATCTCGTCGAGA- 2245765 Query 125197 GATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255 ||||| ||| | || || |||| ||| ||||| ||||| ||||| || ||| Sbjct 2245764 GATTCAGCAGCGAGGTCCAGATCCCTGAGG-CTCGCTGCTTCTACGGCTTCCAGATTATG 2245706 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACA 125298 || |||||| | |||||||| | |||||| || || |||| Sbjct 2245705 ATGGAGAACATCCACTCGGAGACATACTCTCTGCTCATCGACA 2245663 Score = 100 bits (110), Expect = 4e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGA 125426 || |||||| | |||| ||||| ||||| ||| | |||||| | | ||| | | Sbjct 2245538 AAGAAGGCTGACTGGGCCATTCGATGGATTACCGACAAGAAGTCTACCTTCGCTCAACGT 2245479 Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || || ||||| ||||| || || |||||||| ||| ||||| ||||||| Sbjct 2245478 CTTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTC 2245419 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 ||| | |||||||| || |||||||| || || || | |||||| | || || ||| Sbjct 2245418 TGGTTGAAGAAGCGTGGCCTCATGCCAGGTCTCACATTCTCCAACGAGCTCATCTCGCGA 2245359 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT 125584 |||||||| || || ||| || ||| ||| || || Sbjct 2245358 GACGAGGGTCTCCATACTGATTTCGCCTGTCTCCTATT 2245321 >seq12 Length=4789767 Score = 114 bits (126), Expect = 2e-20 Identities = 300/451 (67%), Gaps = 14/451 (3%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || ||||| || || ||||||||| | || ||||| | || |||||||| |||||| Sbjct 3335402 CAAGGTGGCAACAAGCGCCCAGGCGCTTTCGCAATCTACCTTGAGCCTTGGCATGCGGAC 3335343 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || || || | || || ||| |||| ||||| | || || | || Sbjct 3335342 GTGTTCGAGTTCATGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTTCGCGCACGTGAT 3335283 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || ||| | || ||| | ||||||||||| || | | ||| | Sbjct 3335282 CTCTTCCTCGCCCTGTGGATTCCTGATCTCTTCATGAAGCGTGTTGAAAAGAACGGCGAT 3335223 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||| ||| || | ||||| ||| | || |||| || || ||||| Sbjct 3335222 TGGACTCTGATGTGTCCCAACGAATGTCCCGGCCTGGCTGACTGCTACGGTGACGAGTTC 3335163 Query 97116 GAGGCCAAGTACACGGCCTACGAG-----CAAGAGGGCCGATACGTGAGACGAGTCGATG 97170 ||||| ||| || ||| ||| | || || |||| | || | | Sbjct 3335162 GAGGCTCTCTACGAAAAGTATGAGAAGCTCAACAAGG----GTCGCAAGACCA-TCAAGG 3335108 Query 97171 CACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 ||| |||| || ||| | |||||| | ||| ||| || || |||| || | ||| Sbjct 3335107 CAC-AGAAGCTTTGGTATGCCATCCTAGAGGCCCAGACTGAAACCGGAAACCCTTTCATG 3335049 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCA-ACGCCACTTGGGCACCATCAAGGG 97288 |||||||| ||| | |||||||| |||||||| | | ||| ||||||||| | Sbjct 3335048 CTCTACAAAGATGCTTGCAATCGCAAGAGCAACCAGAAGAATCTT-GGCACCATCCGCAG 3334990 Query 97289 CTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||||||||| |||||||| || | |||||| Sbjct 3334989 CTCCAATCTCTGCACGGAGATCATCGAGTAC 3334959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058866523360