Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq3 141 1e-28
seq12 114 2e-20
>seq3
Length=2371949
Score = 141 bits (156), Expect = 1e-28
Identities = 206/283 (73%), Gaps = 6/283 (2%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|||||| |||||||||| ||||| | || ||||| ||||| | || ||| | ||||||
Sbjct 2245942 ATTTGGCAAATGTACAAGAAGGCCGAAGCGTCCTTCTGGACCGCTGAGGAGATTGATCTG 2245883
Query 125079 TCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137
|||||||| || |||||||| | || | | || || ||| | | || || ||
Sbjct 2245882 TCCAAGGATCTTCACGATTGGAACAACAAGATCAAC-GACGACGAGAAATACTTCATCTC 2245824
Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196
||||||||||||||||| |||| || ||||| ||||||||||| ||||| || || |
Sbjct 2245823 ACACATTTTGGCCTTCTTCGCCGCGTCTGATGGCATCGTCAACGAGAATCTCGTCGAGA- 2245765
Query 125197 GATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255
||||| ||| | || || |||| ||| ||||| ||||| ||||| || |||
Sbjct 2245764 GATTCAGCAGCGAGGTCCAGATCCCTGAGG-CTCGCTGCTTCTACGGCTTCCAGATTATG 2245706
Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACA 125298
|| |||||| | |||||||| | |||||| || || ||||
Sbjct 2245705 ATGGAGAACATCCACTCGGAGACATACTCTCTGCTCATCGACA 2245663
Score = 100 bits (110), Expect = 4e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 125367 AAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGA 125426
|| |||||| | |||| ||||| ||||| ||| | |||||| | | ||| | |
Sbjct 2245538 AAGAAGGCTGACTGGGCCATTCGATGGATTACCGACAAGAAGTCTACCTTCGCTCAACGT 2245479
Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486
|| || || ||||| ||||| || || |||||||| ||| ||||| |||||||
Sbjct 2245478 CTTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTC 2245419
Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546
||| | |||||||| || |||||||| || || || | |||||| | || || |||
Sbjct 2245418 TGGTTGAAGAAGCGTGGCCTCATGCCAGGTCTCACATTCTCCAACGAGCTCATCTCGCGA 2245359
Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT 125584
|||||||| || || ||| || ||| ||| || ||
Sbjct 2245358 GACGAGGGTCTCCATACTGATTTCGCCTGTCTCCTATT 2245321
>seq12
Length=4789767
Score = 114 bits (126), Expect = 2e-20
Identities = 300/451 (67%), Gaps = 14/451 (3%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
|| || ||||| || || ||||||||| | || ||||| | || |||||||| ||||||
Sbjct 3335402 CAAGGTGGCAACAAGCGCCCAGGCGCTTTCGCAATCTACCTTGAGCCTTGGCATGCGGAC 3335343
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || || || || || | || || ||| |||| ||||| | || || | ||
Sbjct 3335342 GTGTTCGAGTTCATGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTTCGCGCACGTGAT 3335283
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || || || ||| | || ||| | ||||||||||| || | | ||| |
Sbjct 3335282 CTCTTCCTCGCCCTGTGGATTCCTGATCTCTTCATGAAGCGTGTTGAAAAGAACGGCGAT 3335223
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || ||||| ||| || | ||||| ||| | || |||| || || |||||
Sbjct 3335222 TGGACTCTGATGTGTCCCAACGAATGTCCCGGCCTGGCTGACTGCTACGGTGACGAGTTC 3335163
Query 97116 GAGGCCAAGTACACGGCCTACGAG-----CAAGAGGGCCGATACGTGAGACGAGTCGATG 97170
||||| ||| || ||| ||| | || || |||| | || | |
Sbjct 3335162 GAGGCTCTCTACGAAAAGTATGAGAAGCTCAACAAGG----GTCGCAAGACCA-TCAAGG 3335108
Query 97171 CACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229
||| |||| || ||| | |||||| | ||| ||| || || |||| || | |||
Sbjct 3335107 CAC-AGAAGCTTTGGTATGCCATCCTAGAGGCCCAGACTGAAACCGGAAACCCTTTCATG 3335049
Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCA-ACGCCACTTGGGCACCATCAAGGG 97288
|||||||| ||| | |||||||| |||||||| | | ||| ||||||||| |
Sbjct 3335048 CTCTACAAAGATGCTTGCAATCGCAAGAGCAACCAGAAGAATCTT-GGCACCATCCGCAG 3334990
Query 97289 CTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319
||||||||| |||||||| || | ||||||
Sbjct 3334989 CTCCAATCTCTGCACGGAGATCATCGAGTAC 3334959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058866523360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |