Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq35 109 5e-19
seq33 109 5e-19
>seq35
Length=2560152
Score = 109 bits (120), Expect = 5e-19
Identities = 165/233 (71%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||||| | |||| ||||| ||||||||| || ||||| || | ||| |||||
Sbjct 153107 CCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAG-- 153164
Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
|||| ||| | ||||| ||||| || ||| | ||||| |||| || || ||||| |
Sbjct 153165 ATAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCG 153224
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
| || || || ||||| | || || | |||||| | ||| ||||| | || |
Sbjct 153225 GGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCA 153284
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011
| || | ||||| || || || ||||| ||||| || |||||||||||| ||
Sbjct 153285 CCTCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCATGATT 153337
>seq33
Length=3634720
Score = 109 bits (120), Expect = 5e-19
Identities = 152/211 (72%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTT--GGAATCCT 94856
|||||||| | |||||||||||| || | ||| || ||| | || ||| | |||||
Sbjct 1474494 ACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCG--GAGAGGGTTCGGCCATCCT 1474551
Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916
| ||||| || ||| | ||||| |||| ||||| ||||| || || || || ||||| |
Sbjct 1474552 CGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCT 1474611
Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976
|| || | ||||||| | ||| || || | ||||| |||| |||||||| |
Sbjct 1474612 GGATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCAAGGGTGATGGTCT 1474671
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || || || || || || |||||||||||
Sbjct 1474672 TGCCGGTGAGGGTCTTTACGAAGATCTGCAT 1474702
Score = 102 bits (112), Expect = 7e-17
Identities = 149/211 (71%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|| ||||| | ||||| ||||| || | ||| || ||||||| ||| || |||
Sbjct 1474038 ACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCC 1474097
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
||||| || || | ||||| | | |||||| ||||| || ||||| || || || | |
Sbjct 1474098 AGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATCCTGA 1474157
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || | ||| ||| | ||| ||||||| || || || | ||| ||||| |||
Sbjct 1474158 ATCTTGGACTTTACGTTGTCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGTCTTT 1474217
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || || || || || |||||||||||||
Sbjct 1474218 CCGGTGAGGGTCTTGACGAAGATCTGCATGC 1474248
Score = 84.2 bits (92), Expect = 2e-11
Identities = 113/155 (73%), Gaps = 2/155 (1%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||| ||| ||||| ||||||| | || |||||| ||||| ||||||||||| ||
Sbjct 2337659 ATCTTCCAACTGCTTTCCTGCAAAGATCAGTCGTTGCTGGTCTGGTGGAATACCTTCCTT 2337718
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC-GTCAATCGTGA 94970
||| | |||||| |||||| | ||| ||||| | ||| ||| |||| || |
Sbjct 2337719 GTCTTGAATTTTACTCTTGACATTGTCGATCGTGTCTG-ATGGGTGACACTCAAGAGTTA 2337777
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
| || || || || ||| |||||||| || |||
Sbjct 2337778 TTGTCTTGCCGGTCTTAGTCTTCACAAATATTTGC 2337812
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448290998268960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |