Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq35 109 5e-19 seq33 109 5e-19 >seq35 Length=2560152 Score = 109 bits (120), Expect = 5e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| | |||| ||||| ||||||||| || ||||| || | ||| ||||| Sbjct 153107 CCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAG-- 153164 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 |||| ||| | ||||| ||||| || ||| | ||||| |||| || || ||||| | Sbjct 153165 ATAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCG 153224 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || || || ||||| | || || | |||||| | ||| ||||| | || | Sbjct 153225 GGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCA 153284 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 | || | ||||| || || || ||||| ||||| || |||||||||||| || Sbjct 153285 CCTCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCATGATT 153337 >seq33 Length=3634720 Score = 109 bits (120), Expect = 5e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTT--GGAATCCT 94856 |||||||| | |||||||||||| || | ||| || ||| | || ||| | ||||| Sbjct 1474494 ACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCG--GAGAGGGTTCGGCCATCCT 1474551 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | ||||| || ||| | ||||| |||| ||||| ||||| || || || || ||||| | Sbjct 1474552 CGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCT 1474611 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || | ||||||| | ||| || || | ||||| |||| |||||||| | Sbjct 1474612 GGATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCAAGGGTGATGGTCT 1474671 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || || || ||||||||||| Sbjct 1474672 TGCCGGTGAGGGTCTTTACGAAGATCTGCAT 1474702 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 || ||||| | ||||| ||||| || | ||| || ||||||| ||| || ||| Sbjct 1474038 ACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCC 1474097 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || | ||||| | | |||||| ||||| || ||||| || || || | | Sbjct 1474098 AGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATCCTGA 1474157 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || | ||| ||| | ||| ||||||| || || || | ||| ||||| ||| Sbjct 1474158 ATCTTGGACTTTACGTTGTCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGTCTTT 1474217 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||| Sbjct 1474218 CCGGTGAGGGTCTTGACGAAGATCTGCATGC 1474248 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||| ||||| ||||||| | || |||||| ||||| ||||||||||| || Sbjct 2337659 ATCTTCCAACTGCTTTCCTGCAAAGATCAGTCGTTGCTGGTCTGGTGGAATACCTTCCTT 2337718 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC-GTCAATCGTGA 94970 ||| | |||||| |||||| | ||| ||||| | ||| ||| |||| || | Sbjct 2337719 GTCTTGAATTTTACTCTTGACATTGTCGATCGTGTCTG-ATGGGTGACACTCAAGAGTTA 2337777 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 | || || || || ||| |||||||| || ||| Sbjct 2337778 TTGTCTTGCCGGTCTTAGTCTTCACAAATATTTGC 2337812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290998268960