Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq12 107 3e-19 seq3 86.0 1e-12 >seq12 Length=4789767 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| || || | ||||| | ||||| |||||||| || ||||| ||||||||||| Sbjct 3163878 GCTAAGCGCCACCGAAAGATCT-TGCGAGACAACATCCAGGGTATCACTAAGCCAGCTAT 3163936 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| || ||||||||||| ||||||||| |||||| Sbjct 3163937 CCGACGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTCTG 3163977 >seq3 Length=2371949 Score = 86.0 bits (94), Expect = 1e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| || | ||| | ||| |||||| || || || | ||||| Sbjct 1808581 TGATCTACGAAGAGACCCGAGGTGTCCTCAAGTCTTTCCTCGAGGGTGTCATTCGTGATG 1808522 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || || ||||||||||| || || ||||| |||||||| |||| ||||||| | Sbjct 1808521 CTGTCACATACACCGAGCACGCCAAGCGAAAGACCGTCACCTCTCTGGACGTCGTCTACG 1808462 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 | |||| || || ||||| | | || ||||| || ||||| | ||| Sbjct 1808461 CTCTGAAGCGACAGGGCCGAACCCTCTACGGTTTCGGTGGTTAAACATCT 1808412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075167084948