Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq12 251 9e-62 seq3 109 7e-19 >seq12 Length=4789767 Score = 251 bits (278), Expect = 9e-62 Identities = 1187/1874 (63%), Gaps = 35/1874 (2%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||| || ||||| || | || | || ||||| || ||||||||||| || || ||| Sbjct 3334009 GTGAACTGGATGGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATTCCGGTCTTAAGA 3334068 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 ||||| |||| ||| |||||||| || || | ||| | |||| ||| ||| Sbjct 3334069 CCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATAGTCGGGTCTTTCATA 3334128 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 ||||| |||| || ||| ||||| |||||||| || | ||| |||||||| | | Sbjct 3334129 TGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCGGCAGCCATCTGGACA 3334188 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 | || |||| |||||||| | ||| || || | || |||||| | || | | Sbjct 3334189 ACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGGGCTTTGATATCTGCGGGGATG 3334248 Query 62235 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 |||| | ||||| | ||| || || || || || | ||||| || | ||| | Sbjct 3334249 TTTGGAATGTTCTGGACGGAGCCGTTTTCAGCAATGATACGGTTCTTCATGGCGTCAGAC 3334308 Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351 || || | || | | | | ||||| || || || || || || || ||| Sbjct 3334309 CACAAGCCCATGTCAACCAGATCCTTTAGGAGCCAAGGGTTGACGACCTGGAACTCGCCA 3334368 Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411 | | ||||| || ||| ||||| || ||||| || | |||| || || ||| Sbjct 3334369 GCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGCTCAAAGCACTCGTTGTTACCC 3334428 Query 62412 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62471 || || || | ||| || || ||||| ||||| || | | ||| || | || || Sbjct 3334429 AAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACTGTTGCGAATGCCA 3334488 Query 62472 TATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNN 62531 | | |||||| || || || | | |||| | ||||||||| || || || Sbjct 3334489 TGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCAAAGATCGGAAGGCTTCACATTC 3334548 Query 62532 NNNNNNNNNNNTTGTAGAATACCGT----TACTGGCGTACGATCCTACATATGTATCGTA 62587 || ||||| || | ||| || | | ||| | ||||| ||| Sbjct 3334549 CACATGTCAAACTGCAGAATGCCTTGAGATACAGGAG----AGCCTTCGTATGTGGAGTA 3334604 Query 62588 TGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62647 ||| |||| || || || || || || | || | | ||||| || || Sbjct 3334605 TGGGCCTTGCTCCTTGGCAAGCTCCATGGAAGCAGTGAGAGCGGCATGGTAAATTGTCTC 3334664 Query 62648 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTA-TCAAATGGATAATTTAAGAGA- 62705 || |||| ||| || || ||| |||| || ||| | || || || | ||| | Sbjct 3334665 AAATATCTGCTTGTTCAGCTCTCGTGCCTC-AGGAGACTCGAAAGGC-AGGCGAAGGGCT 3334722 Query 62706 ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62765 | ||||| || || | || ||||| || | ||| || || || || | | | || | Sbjct 3334723 AGGAACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCCTGTGGCGCATGTTGCTG 3334782 Query 62766 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACA 62825 | | ||||| |||| || || || || | || || || ||||| | |||| ||| Sbjct 3334783 TTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGATCTTATTCAAGTTTCGAACA 3334842 Query 62826 ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC----TATTACAAA 62881 | |||| | ||||| | ||| || | || ||| | | || || || | || | Sbjct 3334843 ACAACTTCGGTAACATCGTGCAGCTTTTGGAAGTCATAGCAGCCTTCATTGTAGTCCACA 3334902 Query 62882 CATGTT--CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TA 62938 | | |||||| | || |||| || || ||||| ||||||| | | ||| || Sbjct 3334903 AAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTCATCGGGGGC-GCAGTA 3334961 Query 62939 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACT 62998 | || ||||| ||||| ||||| | ||| || || | ||| | || || || Sbjct 3334962 CTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAGATTCTTCTGGTTGCT 3335021 Query 62999 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 63058 ||| || || ||||| || || || ||||| || | || |||||| |||| | || Sbjct 3335022 CTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGGCCTC 3335081 Query 63059 TATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCT-TTCTCTT 63116 || || || | ||| | | || | ||||| || | ||| | | | || | Sbjct 3335082 TAGGATGGCATACCAAA-GCTTCTGTGCCTTGATGGTC---TTGCGACCCTTGTTGAGCT 3335137 Query 63117 TCGTATAGT----GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 63172 || ||| | ||| | | | ||||||||||| || | | ||| || || Sbjct 3335138 TCTCATACTTTTCGTAGAGAGCC--TCGAACTCGTCACCGTAGCAGTCAGCCAGGCCGGG 3335195 Query 63173 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63232 |||||| | |||||||||| | ||| || |||| | | || || ||||| ||||| Sbjct 3335196 ACATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTCAACACGCTTCATGAAGAG 3335255 Query 63233 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 63292 |||||||||||| || || | || ||||| | | | | ||| || || || || Sbjct 3335256 ATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCATGGTT 3335315 Query 63293 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63352 |||| || || | |||| | | | || | |||||| || || | ||| || || | Sbjct 3335316 CTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAA 3335375 Query 63353 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63412 | | || || || ||||| || || ||||| | || | ||| |||||||| | |||| Sbjct 3335376 AGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGAAGACTCG 3335435 Query 63413 CAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGC 63472 || ||| ||||| | |||||| || | |||||||| || | ||| || || |||| Sbjct 3335436 CAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGTATGAACCGGTGGC 3335495 Query 63473 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63532 ||| ||| || || || || || || ||||| || ||||| | ||| || Sbjct 3335496 ACGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCTTGGAGATCATTGCACAGGT 3335555 Query 63533 TTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 || | ||||| || || ||||| ||||| ||||| |||||| | ||| || || Sbjct 3335556 CTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGCATGA 3335615 Query 63593 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63652 ||||| ||| || || |||||||| || | ||| || || || || || || | Sbjct 3335616 AGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTGTGAAAAA 3335675 Query 63653 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63712 || || | | ||||| || ||||| || || | || | || || Sbjct 3335676 CTTGCTGGACATCAAGTTGTAGGTTTCAATGACTCGCTCAACATTGTCTCCCCAGATACC 3335735 Query 63713 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63772 || || |||||||| | ||||||||| |||| |||||||||||| | | ||| | Sbjct 3335736 GACAGCAACACGCATGATCATGTGCTGGGGTCGCTCAACGATCTTGCCATCAAGTTTAAG 3335795 Query 63773 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63832 | ||||||| | || |||||||| ||||| ||||| | ||| |||||||| || || Sbjct 3335796 GAGGTAGGATCTCTCTAAAGTTTTGAAACCGAAATATTGGTAGTTGAAGTCTCGGTCATA 3335855 Query 63833 AATAATAACCGAGT 63846 | ||| | |||| Sbjct 3335856 CACAATGGCGGAGT 3335869 >seq3 Length=2371949 Score = 109 bits (120), Expect = 7e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| |||||||| || ||||||||||||| || || |||||||| || ||||| Sbjct 2245329 ACAGGCGAAATCAGTATGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAG 2245388 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| ||||||||||| || | ||| || |||||||| || | || ||||| Sbjct 2245389 ACCTGGCATGAGGCCACGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 2245448 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAG 33452 ||| ||||| || ||||| ||||||| ||| Sbjct 2245449 GATACCTTCGACGGCAGCGAAGGCAACAAG 2245478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946919673760