Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq12 410 3e-109 >seq12 Length=4789767 Score = 410 bits (454), Expect = 3e-109 Identities = 1175/1785 (66%), Gaps = 30/1785 (2%) Strand=Plus/Minus Query 363390 TTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGA 363449 |||||| | || || | |||| ||||||||| | | |||| | || ||||| Sbjct 3335829 TTTCGGTTTCAAAACTTTAGAGAGATCCTACCTCCTTAAACTTGATGGCAAGATCGTTGA 3335770 Query 363450 ACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGC 363509 || || ||||| ||| | |||||||||||| | |||||| | ||||||| Sbjct 3335769 GCGACCCCAGCACATGATCATGCGTGTTGCTGTCGGTATCTGGGGAGACAATGTTGAGCG 3335710 Query 363510 CGCGATTGAAACATATAAGCTTCTAAGT---GCTCGTGTATTCACGCACGCCACGCCAAC 363566 | |||||||| || || ||| | || || || | ||||| || ||| ||||||| Sbjct 3335709 AGTCATTGAAACCTACAA-CTTG-ATGTCCAGCAAGTTT-TTCACACATGCCTCGCCAAC 3335653 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | |||||| || || | | | | || ||||||| ||||| || | | ||||| Sbjct 3335652 CCTCTTCAATGCGGGCACCCCTCAGGCTCAACTGTCTTCATGCTTCCTAGTCGACATGAA 3335593 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 ||| || ||| ||||| || | ||||| || |||| ||||| | || ||||||| Sbjct 3335592 GGATGACAGCATTGAGGGCATTTACGACACCCTCAAGACCTGTGCAATGATCTCCAAGAT 3335533 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA--CAGAACAGTTACATTCGC 363744 || || || ||||| | |||||| | | ||||| | | || ||||| ||| Sbjct 3335532 GGCTGGTGGTATTGGCCTCAACATCCACCGTATCCGTGCCACCGGTTCA--TACAT-CGC 3335476 Query 363745 GG-CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803 || ||| || || || || | |||||||||| || || || | || ||||| Sbjct 3335475 GGGCACCAATGGCACTTCCAACGGTGTCATTCCCATGCTGCGAGTCTTCAATAACACTGC 3335416 Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863 | || || || || ||||| |||||| ||| || || || || || || ||||| Sbjct 3335415 TCGTTATGTGGATCAAGGTGGCAACAAGCGCCCAGGCGCTTTCGCAATCTACCTTGAGCC 3335356 Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923 | ||||| || | || ||||| | || ||||| || ||| || || || ||| | Sbjct 3335355 TTGGCATGCGGACGTGTTCGAGTTCATGGACCTCCGAAAGAACCATGGCAAGGAAGAAGT 3335296 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 || ||||||||||| ||| || || ||| || |||| | || |||||||| || || Sbjct 3335295 TCGCGCACGTGATCTCTTCCTCGCCCTGTGGATTCCTGATCTCTTCATGAAGCGTGTTGA 3335236 Query 363984 GGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTA 364041 | | | | ||||| | || | || || |||||||||| || || | || Sbjct 3335235 A--AAGAACGGCGATTGGACTCTGATGTGTCCCAACGAATGTCCCGGCCTGGCTGACTGC 3335178 Query 364042 TGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG 364101 | |||||||| | | ||||| |||||||||||||| | |||| ||| ||| Sbjct 3335177 TACGGTGACGAGTTCGAGGCTCTCTACGAAAAGTATGAGAAGCTCAACAAGGGTCGCAAG 3335118 Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161 || || ||||||||||| |||| ||||||| | || | |||| ||| || |||| | Sbjct 3335117 ACCATCAAGGCACAGAAGCTTTGGTATGCCATCCTAGAGGCCCAGACTGAAACCGGAA-A 3335059 Query 364162 CCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTAC 364220 |||| | ||| | ||||||||| | ||||| |||||| ||||||| || | ||||| || Sbjct 3335058 CCCTTTCATGCTCTACAAAGATGCTTGCAATCGCAAGAGCAACCAGAAGAATCTTGGCAC 3334999 Query 364221 AATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTG 364279 | || |||| ||| || || || ||||| || || ||| ||| ||||| ||| | Sbjct 3334998 CA-TCCGCAGCTCCAATCTCTGCACGGAGATCATCGAGTACTGCGCCCCCGATGAGGTCG 3334940 Query 364280 CCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGATGGTACTT 364333 |||| || ||| | || ||| | || | ||| | ||||| || || || | Sbjct 3334939 CCGTCTGCAACTTGGCTTCGCTGGCCTTGCCGTCCTTTGTGGACTACAATGAAGGCTGCT 3334880 Query 364334 TTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTA 364393 |||| ||| | || | || || ||| | || | | | || | | ||| | | Sbjct 3334879 ATGACTTCCAAAAGCTGCACGATGTTACCGAAGTTGTTGTTCGAAACTTGAATAAGATCA 3334820 Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGA 364453 ||||| || || || || |||| ||||| || || ||||| || | || | Sbjct 3334819 TCGACGTCAACTACTACCCCGTTCCGGAAGCACAGAACAGCAACATGCGCCACAGGCCCA 3334760 Query 364454 TTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATT 364513 ||||| | || || ||||| || || || | || | || || | || || | Sbjct 3334759 TTGGTGTCGGCGTTCAGGGTCTTGCAGATGCGTTCCTAGCCCTTCGCCTGCCTTTCGAGT 3334700 Query 364514 CGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGA 364573 | ||||| || || | || || ||| |||| ||||| ||||| || |||||| | | Sbjct 3334699 CTCCTGAGGCACGAGAGCTGAACAAGCAGATATTTGAGACAATTTACCATGCCGCTCTCA 3334640 Query 364574 CTGCTT-CGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCT 364632 |||||| | || ||| ||| | ||||| | ||||| || || || || || ||| Sbjct 3334639 CTGCTTCCATGGAGCTTGCCAAGGAGCAAGGCCCA-TACTCCACATACGAAGGCTCTCCT 3334581 Query 364633 CTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAAC 364692 | || || || | | |||||||| | |||||||| | ||| || | | ||| || Sbjct 3334580 GTATCTCAAGGCATTCTGCAGTTTGACATGTGGAATGTGAAGCCTTCCGATCTTTGGGAC 3334521 Query 364693 TGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGC 364751 |||| |||| | | ||| | ||| |||||| | ||||||| || | ||| Sbjct 3334520 TGGGCATCGCTGAAGGAGCAA-ATCAAGGCGCATGGCATTCGCAACAGTCTGCTAGTAGC 3334462 Query 364752 GCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTT 364811 || ||||| || || |||| | |||||| | || |||||||||||||| || |||| Sbjct 3334461 ACCAATGCCTACCGCCAGTACTTCCCAGATCTTGGGTAACAACGAGTGCTTTGAGCCGTA 3334402 Query 364812 TACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTA 364871 ||| |||| | || |||| | || ||| | || || || | ||| || || | Sbjct 3334401 CACATCCAATATCTACCAACGCAGAGTCCTTGCTGGCGAGTTCCAGGTCGTCAACCCTTG 3334342 Query 364872 CCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCAT 364931 || | |||||||| ||| || ||||| |||| |||||||||| |||||| Sbjct 3334341 GCTCCTAAAGGATCTGGTTGACATGGGCTTGTGGTCTGACGCCATGAAGAACCGTATCAT 3334282 Query 364932 CGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTA 364991 || | || || || || |||||||||||| | || | |||| | || | | || Sbjct 3334281 TGCTGAAAACGGCTCCGTCCAGAACATTCCAAACATCCCCGCAGATATCAAAGCCCTCTA 3334222 Query 364992 CAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGC 365051 ||| || || |||||||| || ||| ||| | | | ||||| ||||| |||||||| Sbjct 3334221 CAAGACTGTCTGGGAAATCTCACAGCGTACTGTTGTCCAGATGGCTGCCGACCGCGGTGC 3334162 Query 365052 TTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCT 365111 || || |||| ||||| || ||| | |||| | || || | |||| | Sbjct 3334161 CTTCATTGATCAGTCTCAGTCCTTGAACATCCATATGAAAGACCCGACTATGGGCAAGAT 3334102 Query 365112 TACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 || |||||||||| ||| ||||| |||||||||||| || Sbjct 3334101 CACCAGCATGCATTTCGCCGGCTGGAAGCTCGGTCTTAAGACCGG 3334057 Score = 87.8 bits (96), Expect = 5e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 111732 TGCCAAATGTATCAGCGAT-CTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || ||| |||||||||||| |||| ||||| |||||||| ||||| || ||||||||||| Sbjct 3896830 TGTCAATTGTATCAGCGATCCTGC-GATATGGGTCTTGGCGTTCCATTCAATATTGCAAG 3896888 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 ||||||||||| || | | ||||||| || |||| || || | | Sbjct 3896889 CTACGCACTACTGACACACATGCTCGCTCACGTTTGCGATCTGGTGCCTGGAAGCCTTAC 3896948 Query 111851 TCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACA 111907 ||||| || ||||| ||||| || || | ||||| | ||||| || || || || Sbjct 3896949 ACACGTCATGGGAGACGCGCACGTCTATATCGACCACGTCGATGCTCTAAAGACCCA 3897005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352998828152