Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq33 109 5e-19
seq35 107 2e-18
>seq33
Length=3634720
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || || |||| ||||| || || | |
Sbjct 1474702 ATGCAGATCTTCGTAAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 1474643
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| | |||| || || || ||||||||||| || || || || ||
Sbjct 1474642 GATACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 1474583
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || |||||||| ||| | |||||| ||| ||| ||||||| ||||||
Sbjct 1474582 CAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAAC 1474523
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || || ||||| || | || || ||| | ||| | || || |||
Sbjct 1474522 ATCCAGAAGGAATCTACTCTTCACTTGGTTCTCCGACTCCGTGGTGGT 1474475
Score = 107 bits (118), Expect = 2e-18
Identities = 146/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | ||||| || ||| ||||||| || || || | ||
Sbjct 1474474 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCC 1474415
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || | | || || ||||||||||||||||| || ||||| || ||
Sbjct 1474414 GATACCATCGATAACGTAAAGTCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAG 1474355
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || || ||||| ||||| ||||| || || |||| || ||||||
Sbjct 1474354 CAGCGACTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGAACGCTCTCGGACTACAAC 1474295
Query 22399 ATTCAAAAAGAATCCACCATACAT 22422
||||| || || || ||| | |||
Sbjct 1474294 ATTCAGAAGGAGTCTACCCTCCAT 1474271
Score = 104 bits (114), Expect = 2e-17
Identities = 131/180 (73%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| ||||| ||||| | | ||||| | ||| | ||||
Sbjct 1474906 ACTGGAAAGACCATCACCCTTGAGGTGGAGTCTTCGGATACTATCGACAACGTCAAGTCG 1474847
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| ||||| || || || || || || || ||||| |||||
Sbjct 1474846 AAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGCCTGATCTTTGCTGGCAAG 1474787
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | |||||| ||| ||| ||||||| |||||||| || || || |||||| | |||
Sbjct 1474786 CAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTTCAT 1474727
Score = 96.9 bits (106), Expect = 3e-15
Identities = 116/155 (75%), Gaps = 2/155 (1%)
Strand=Plus/Minus
Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC-G 22279
|||||| ||||| || ||| ||||| || || | |||||||| ||| | ||| | |
Sbjct 2337812 GCAAATATTTGTGAAGACTAAGACCGGCAAGACAATAACTCTTGA-GTGTCACCCATCAG 2337754
Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339
| || | ||| || |||| ||||||||||||||||| ||||||||||| || || |
Sbjct 2337753 ACACGATCGACAATGTCAAGAGTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAGC 2337694
Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGAT 22374
|||| || || ||||| || || ||||| || |||
Sbjct 2337693 AACGACTGATCTTTGCAGGAAAGCAGTTGGAAGAT 2337659
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| || ||||||||||| ||||| || || ||||||||||| || || || ||
Sbjct 1474162 AAGATTCAGGATAAGGAGGGTATCCCACCAGACCAGCAACGTCTTATCTTCGCTGGTAAG 1474103
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | || || |||||| | ||| |||||||| || || || || || | ||
Sbjct 1474102 CAGCTGGAAGACGGTCGCACCCTGAGCGACTACAACATCCAGAAGGAGTCTACGCTCCAC 1474043
Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445
||||| | || ||||||| ||
Sbjct 1474042 TTAGTCCTCCGTCTGCGCGGCGG 1474020
>seq35
Length=2560152
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || ||||| | || || || || |||| || || ||||| | ||
Sbjct 153333 ATGCAGATCTTCGTCAAAACCCTTACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCC 153274
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || || |||||||||||||| || || || || |||
Sbjct 153273 GACACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAA 153214
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || |||||||| ||| | ||||| ||| ||| | || |||||||||
Sbjct 153213 CAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTATCTGATTACAAC 153154
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| || || || ||
Sbjct 153153 ATTCAGAAGGAGTCGAC 153137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727815844340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |