Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq33 176 8e-39 seq35 163 5e-35 seq26 89.7 9e-13 >seq33 Length=3634720 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | || ||||| ||||| ||||| || |||||||| || ||| Sbjct 1474020 CCGCCGCGCAGACGGAGGACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 1474079 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| || || | ||| ||||| ||||| Sbjct 1474080 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGG 1474139 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| | ||| ||| ||||| ||||| | || |||||| Sbjct 1474140 ATACCCTCCTTATCCTGAATCTTGGACTTTACGTTGTCGATTGTGTCAGACGACTCTACT 1474199 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| ||||| ||||||||||||||||| |||||||| Sbjct 1474200 TCCAACGTAATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 1474246 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | || || || ||||| || || ||||| || || ||| Sbjct 1474248 CCACCACGAAGGCGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAG 1474307 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || |||||||| || ||||| ||||||| || ||||| ||||| Sbjct 1474308 AGCGTTCGACCGTCCTCCAACTGCTTGCCCGCGAAGATGAGTCGCTGCTGGTCTGGTGGG 1474367 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||||||||| | ||| ||| |||||||| || | ||| || || Sbjct 1474368 ATGCCCTCCTTGTCTTGAATCTTGGACTTTACGTTATCGATGGTATCGGATGACTCAACC 1474427 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || ||||||||||||||||| |||||||| Sbjct 1474428 TCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1474474 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || || || || |||||||| || |||||| Sbjct 1474476 CCACCACGGAGTCGGAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAG 1474535 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || | || || ||||| || || Sbjct 1474536 AGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGG 1474595 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| |||||||| || | || || || Sbjct 1474596 ATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACC 1474655 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||| ||||| |||||||| Sbjct 1474656 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTTACGAAGATCTGCAT 1474702 Score = 98.7 bits (108), Expect = 2e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 68300 CCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCC 68359 ||| |||||||| |||||||| || || || || |||| ||| ||||| |||||||| || Sbjct 2337653 CCTACCATCTTCCAACTGCTTTCCTGCAAAGATCAGTCGTTGCTGGTCTGGTGGAATACC 2337712 Query 68360 TTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 ||||||||||||||| || |||||| ||||| ||||||| || Sbjct 2337713 TTCCTTGTCTTGAATTTTACTCTTGACATTGTCGATCGTGTCTGATG 2337759 >seq35 Length=2560152 Score = 163 bits (180), Expect = 5e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || |||| |||| ||| | || ||||| || || ||||| ||||| || Sbjct 153107 CCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGAT 153166 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | || |||||||| || || Sbjct 153167 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGG 153226 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||| | |||||| ||||||||||| | || || || Sbjct 153227 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 153286 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || ||||| ||||| |||||||| |||||||| || Sbjct 153287 TCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCATGAT 153336 >seq26 Length=3556503 Score = 89.7 bits (98), Expect = 9e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 224961 GGTCCTGGCCTGAGGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGT 225020 |||| | ||| |||||| ||||| || | ||||| || || || | |||| ||| Sbjct 331240 GGTCGTCGCCGTTGGCATAGCGCCATTGTAGATACTGATTCGGTGTTTTCTCCAAGTGCA 331299 Query 225021 TCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCC 225080 |||| | || | || ||||| || | ||| | || |||| |||||||||||| Sbjct 331300 TCTCCACGTGCTCCAAGGCATGTTGTTTGATGTAGCCAATTCGCAGATTGGGATGCTTCT 331359 Query 225081 ACACAGAGCCCCGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGC 225140 || ||| |||||| ||||||| || |||| |||||| | || | ||||| Sbjct 331360 CGACCTTGCCAACAGTCGGAATGACCTCGCCTGTAAGGAGCTTGATCAAAGTCGACTTGC 331419 Query 225141 CCGCACCATTGGGGCCAATCACGCCAATCCGGGATGACA 225179 | |||||||||||||| || | | ||| ||||| |||| Sbjct 331420 CTGCACCATTGGGGCCGATTATGGCAACGCGGGAAGACA 331458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621985269920