Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq12 266 6e-66 seq3 158 2e-33 >seq12 Length=4789767 Score = 266 bits (294), Expect = 6e-66 Identities = 1094/1703 (64%), Gaps = 69/1703 (4%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| ||| || | || || | || | ||||||||||| |||||||| Sbjct 3334006 ACGGTGAACTGGATGGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATTCCGGTCTTA 3334065 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || |||| || || |||||| || | ||| ||| || | ||| Sbjct 3334066 AGACCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCAT----AG--TCGGG 3334119 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 || | | | | || ||| | |||||| ||| || | ||||| | || || Sbjct 3334120 TCTTTC------ATATGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCG 3334173 Query 243917 GCGGCCAT--GGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCT 243974 || ||||| || | || | | |||||| || || || |||||||||| || | Sbjct 3334174 GCAGCCATCTGGACAACAGTACGCTGTGAGATTTCCCAGACA--GTCTTGTAGAGGGCTT 3334231 Query 243975 TGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGG 244034 ||| | |||||| | |||||||| || ||||| || | | |||| || Sbjct 3334232 TGATATCTGCGGGGATGTTTGGAATGTTCTGGACGGAGCCGTTTTCAGCAATGATACGGT 3334291 Query 244035 TGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCT---GT 244091 | |||| || ||||| ||||| | |||| ||| | || ||| || Sbjct 3334292 TCTTCATGGCGTCAGACCACAAGCCCATGTCAACCAGATCCTTTA---GGAGCCAAGGGT 3334348 Query 244092 TCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCT 244151 | || ||||| ||||| || | || || | ||| ||||||| ||| || ||||| Sbjct 3334349 TGACGACCTGGAACTCGCCAGCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGCT 3334408 Query 244152 CGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCA 244211 | | || ||| |||| |||| ||||| | || || || || ||||| || | || | Sbjct 3334409 CAAAGCACTCGTTGTTACCCAAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTA 3334468 Query 244212 GCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACA 244271 |||||||||| | | ||| ||| || ||| | | ||| ||||||||| | Sbjct 3334469 GCAGACTGTTGCGAATGCCATGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCAAA 3334528 Query 244272 TGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGA 244331 | || ||| | || | || |||||||||||||||||| | || | | Sbjct 3334529 GATCGGA-AGG-CTTCACATT-------CCACATGTCAAACTGCAGAATGCCTTGAGATA 3334579 Query 244332 CGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGT 244391 | || ||| ||||| || | ||| || || | || ||| |||| | | Sbjct 3334580 CAGGAGAGCCTTCGTATGTGGAGTATGGGCCTTGCTCCTTGGCAAGCTCCATGGAAGCAG 3334639 Query 244392 CGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGC 244451 ||| ||||| | ||| || ||||| || ||| |||||||| || || |||| | | Sbjct 3334640 TGAGAGCGGCATGGTAAATTGTCTCAAATATCTGCTTGTTCAGCTCTCGTGCCT--CAGG 3334697 Query 244452 AGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCC 244509 || ||| || | || | | ||| | || || || ||||| ||||||| || Sbjct 3334698 AGACTCGAAAGGCAGGCGAAGGGCTAGGAACGCATCTGCAAGACCCTGAACGCCGACACC 3334757 Query 244510 GATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTC 244569 ||||| ||||| ||| ||||| | | ||||| || |||||||| ||||| |||| Sbjct 3334758 AATGGGCCTGTGGCGCATGTTGCTGTTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTC 3334817 Query 244570 GATCACCTTGTTGAGGTTGCGGGTGATCA-TGCGGACGACGTCGGCCAGCAGCTGAAAGT 244628 ||| | ||| || | ||| || | | | ||| || ||| |||| || |||| Sbjct 3334818 GATGATCTTATTCAAGTTTCGAACAACAACTTCGGTA-ACATCGTGCAGCTTTTGGAAGT 3334876 Query 244629 CGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGG 244688 | || | | ||| || || ||| || || || ||| | || | Sbjct 3334877 CATA-------GCAGCCTTC---ATTGTAGTCCACA-AAGGACGGCAAGGCCAGCGAAG- 3334924 Query 244689 CCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGT 244748 ||| |||||||||||| ||||| || | | | ||||| || ||||| |||||||| | Sbjct 3334925 CCAAGTTGCAGACGGCGACCTCATCGGGGGCGCAGTACTCGATGATCTCCGTGCAGAGAT 3334984 Query 244749 TACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGT 244808 | || ||||||||| || | || || ||| |||| ||||| || || |||| Sbjct 3334985 TGGAGCTGCGGATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGATTGCAAGCATCTTTGT 3335044 Query 244809 AGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCC 244868 |||||||||| || ||||| || |||||| | |||| | | ||| || | | Sbjct 3335045 AGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGGCCTCTAGGATGGCATACCAAAGCTTCT 3335104 Query 244869 TAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC--CTCGTAGCGGGTGTACAGGGCCTC 244926 ||||||| ||| ||||| ||||| | || ||| || ||| || ||||| Sbjct 3335105 GTGCCTTGATGGTCTTGCGACCCTTG--TTGAGCTTCTCATACTTTTCGTAGAGAGCCTC 3335162 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCC 244985 ||||||| || || || | |||||||| || || ||| ||||| ||| ||| Sbjct 3335163 GAACTCGTCACCGTAGCAGTCAGCCAGGCCGGGACA-TTCGTTGGGACACATCAGAGTCC 3335221 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | |||||| | | || | || ||||||||| || || ||||| ||||| |||||| Sbjct 3335222 AATCGCCGTTCTTTTCAACACGCTTCATGAAGAGATCAGGAATCCACAGGGCGAGGAAGA 3335281 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 | || | | | || ||| |||| |||||| | || |||| || || || | Sbjct 3335282 GATCACGTGCGCGAACTTCTTCCTTGCCATGGTTCTTTCGGAGGTCCATGAACTCGAACA 3335341 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 |||| | ||||| ||||| | ||||| |||| ||||| || ||||||||||| || | Sbjct 3335342 CGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAAAGCGCCTGGGCGCTTGTTGCCACCTT 3335401 Query 245166 GGTCCACCATCCTCTCGAGC-GCG---TTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 | |||| | | ||||| | | ||||||| ||||| | || | | ||||| Sbjct 3335402 GATCCA----CATAACGAGCAGTGTTATTGAAGACTCGCAGCATGGGAATGACACCGTTG 3335457 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGA---GGTTGCTGATGGAC 245278 || ||| ||||||||| |||||| | || || | | || ||| | || || Sbjct 3335458 GAAGTGCCATTGGTGCCCGCGATGTATGAACCGGTGGCACGGATACGGTGGATGTTG--- 3335514 Query 245279 ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338 | ||| | || || || ||||||||| | || ||| |||||| |||||| ||| Sbjct 3335515 AGGCCAATACCACCAGCCATCTTGGAGATCATTGCACAGGTCTTGAGGGTGTCGTAAATG 3335574 Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 ||||| |||||||| |||||||| || || ||||| || ||||| || | || ||| Sbjct 3335575 CCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGCATGAAGACAGTTGAGCCTGAGGG 3335634 Query 245399 CTGCACGAGTTGAACAGAGTGGG 245421 ||| || ||||| || || || Sbjct 3335635 GTGCCCGCATTGAAGAGGGTTGG 3335657 >seq3 Length=2371949 Score = 158 bits (174), Expect = 2e-33 Identities = 311/446 (70%), Gaps = 13/446 (3%) Strand=Plus/Minus Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 || || ||||| | |||||||| || ||||||||| || ||||| || ||||||||| Sbjct 2245478 CTTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTC 2245419 Query 42765 TGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 ||| | ||| || || || ||||| || ||||| ||||| ||||| |||||| | Sbjct 2245418 TGGTTGAAGAAGCGTGGCCTC-ATGCCAGGTCTCACATTCTCCAACGAGCTCATCTCGCG 2245360 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA-CA 42882 |||||||| || |||| || || ||||| ||||| ||||| ||| | ||| | | Sbjct 2245359 AGACGAGGGTCTCCATACTGATTTCGCCTGTCTCCTATTCTC---TCACTTGAGGAATCG 2245303 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 | | | || || ||||| || | ||| || || || | || ||| | |||| Sbjct 2245302 ACCAAGCAAACAAG-TGGTCCAGGATGTTATCGTTGACGCTGTCAAAATTGAGCAAGAGT 2245244 Query 42943 TCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGA-CCTCATGTGCAA 43000 |||| || || | ||||| ||| || | |||||||| | ||| ||| ||| | Sbjct 2245243 TCCTGACCGAGGCTCTGCCATGTG-GTCTTCTTGGCATGAA-CGCGACCCTGATGAAGCA 2245186 Query 43001 GTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACA 43059 ||| ||| ||| ||| ||||| | ||||| || | ||| || | | || | Sbjct 2245185 GTATATCGAGTTCGTTGCCGATCGACTCCTGGTCGCTCTTGGCAACGAGAAG-GTATATA 2245127 Query 43060 ACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTT 43119 | | | |||||||||||| |||||||||||||| | | |||||||||||||| | Sbjct 2245126 AGGTGTCCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGGCGGCAAGACCAACTTCT 2245067 Query 43120 TCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||| |||||||| |||||| Sbjct 2245066 TCGAGAAGCGAGTCGCCGATTACCAG 2245041 Score = 127 bits (140), Expect = 4e-24 Identities = 179/249 (72%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| | ||| ||||||||| ||||||||||| ||| ||||||| Sbjct 2245933 ATGTACAAGAAGGCCGAAGCGTCCTTCTGGACCGCTGAGGAGATTGATCTGTCCAAGGAT 2245874 Query 42369 ACGGCCGGCTGGGAGT-CACTGTCTGAGA--ACGAAAAGTTTTTCCTCAAAAACATACTG 42425 || ||| | || || || |||| || | ||| || | |||| || Sbjct 2245873 CTTCACGATTGGAACAACAAGATCAACGACGACGAGAAATACTTCATCTCACACATTTTG 2245814 Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 |||||||||||||| ||||| ||||| ||||| ||||| || | | || |||| | Sbjct 2245813 GCCTTCTTCGCCGCGTCTGATGGCATCGTCAACGAGAATCTCGTCGAGAGATTCAGCAGC 2245754 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 ||||| ||| | |||||| ||||||||||||||||||||||| || |||||| | Sbjct 2245753 GAGGTCCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATTATGATGGAGAACATC 2245694 Query 42546 CACTCTGAG 42554 ||||| ||| Sbjct 2245693 CACTCGGAG 2245685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338775047360