Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq33 98.7 1e-15 >seq33 Length=3634720 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || | || || || |||| || | |||||| || ||||| Sbjct 1474283 CTCCTTCTGAATGTTGTAGTCCGAGAGCGTTCGACCGTCCTCCAACTGCTTGCCCGCGAA 1474342 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 ||||||||||||||||| | ||| | || |||||||| | ||| | || | || | Sbjct 1474343 GATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGT-CTTGAATCTTGGACTTTACGT 1474401 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || ||| || || || |||| ||||| || ||||| || || ||||| | Sbjct 1474402 TATCGATGGTATCGGATGACTCAACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTGA 1474461 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 1474462 CGAAGATCTGCAT 1474474 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||| || || |||| || ||||||||||||||||| Sbjct 1474055 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAA 1474114 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || || |||||||| | ||| | | |||||| ||| ||| | || | | ||| Sbjct 1474115 GATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATCC-TGAATCTTGGACTTTACGT 1474173 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| ||| || || || | ||| ||||| || || || || ||||| | Sbjct 1474174 TGTCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGTCTTTCCGGTGAGGGTCTTGA 1474233 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 1474234 CGAAGATCTGCAT 1474246 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || | || || || | || || |||||||| || ||||| Sbjct 1474512 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAG 1474571 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | |||||||||||| | || | | |||||||||| ||| || |||| ||| Sbjct 1474572 ATCAATCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTCGACTTGA-CGTT 1474630 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || || || || || || | |||||||| ||||| || || |||||||| Sbjct 1474631 GTCGATGGTATCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTTAC 1474690 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 1474691 GAAGATCTGCAT 1474702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212555554240