Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq12 215 5e-51 >seq12 Length=4789767 Score = 215 bits (238), Expect = 5e-51 Identities = 342/486 (70%), Gaps = 6/486 (1%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||| | || ||||| ||||| ||||| ||||| | | || ||||||| || ||||| Sbjct 3335663 GCCTCGCCAACCCTCTTCAATGCGGGCACCCCTCAGGCTCAACTGTCTTCATGCTTCCTA 3335604 Query 93952 AT-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGAC 94010 | ||| | |||| ||| ||| || |||| ||||| ||||||| |||||| | Sbjct 3335603 GTCGAC-ATGAAGGATGACAGCATTGAGGGCATTTACGACACCCTCAAGACCTGTGCAAT 3335545 Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGT 94068 ||||| || || || || || || ||| ||||| |||| ||||||| ||| Sbjct 3335544 GATCTCCAAGATGGCTGGTGGTATTGGCCTCAACATCCAC--CGTATCCGTGCCACCGGT 3335487 Query 94069 TCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTC 94128 || |||||| || ||||||||||| |||||||| || | || ||||| || |||||| Sbjct 3335486 TCATACATCGCGGGCACCAATGGCACTTCCAACGGTGTCATTCCCATGCTGCGAGTCTTC 3335427 Query 94129 AACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTC 94188 || ||| | || || || ||||| || ||||| | | | || ||||||| || Sbjct 3335426 AATAACACTGCTCGTTATGTGGATCAAGGTGGCAACAAGCGCCCAGGCGCTTTCGCAATC 3335367 Query 94189 TATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGC 94248 || || ||||| ||||| ||||||||| | ||||| ||||| ||||||||||| ||| Sbjct 3335366 TACCTTGAGCCTTGGCATGCGGACGTGTTCGAGTTCATGGACCTCCGAAAGAACCATGGC 3335307 Query 94249 AACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || || | | || | || |||||| ||| || ||| | || || || || ||| Sbjct 3335306 AAGGAAGAAGTTCGCGCACGTGATCTCTTCCTCGCCCTGTGGATTCCTGATCTCTTCATG 3335247 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || || || || || ||| || |||| ||| | |||||||| ||||||||||| ||| Sbjct 3335246 AAGCGTGTTGAAAAGAACGGCGATTGGACTCTGATGTGTCCCAACGAATGTCCCGGCCTG 3335187 Query 94369 TCCGAC 94374 | ||| Sbjct 3335186 GCTGAC 3335181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722977374560