Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq33 96.9 3e-15
seq2 96.9 3e-15
seq35 95.1 1e-14
>seq33
Length=3634720
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/215 (71%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || |||||||| ||||| || || ||| || |||| ||| || | ||
Sbjct 1474500 TGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGC 1474559
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || ||| | |||||||| |||||||| || || || || || || || || || ||
Sbjct 1474560 TTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTC 1474619
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|||| || | || | ||| || ||||||||||| || || || | || ||||||||
Sbjct 1474620 GACTTGA-CGTTGTCGATGGTATCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 1474678
Query 45317 TAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351
|| || ||||| || || ||||| ||| || ||
Sbjct 1474679 GAGGGTCTTTACGAAGATCTGCATACCGCCACGAA 1474713
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| ||||| || | | |||| || ||||| || ||||| ||||| || || |||||
Sbjct 1474020 CCGCCGCGCAGACGGAGGACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 1474079
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| | || |||| || || || ||| | || | ||||||||||| || ||
Sbjct 1474080 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGG 1474139
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
|| || || ||||| ||||| || || | || | || | ||||| || ||||| ||
Sbjct 1474140 ATACCCTCCTTATCCTGAATCTTGGACTTTA-CGTTGTCGATTGTGTCAGACGACTCTAC 1474198
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| | |||| || || ||||| || || || || || || |||||
Sbjct 1474199 TTCCAACGTAATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 1474246
Score = 84.2 bits (92), Expect = 2e-11
Identities = 113/155 (73%), Gaps = 2/155 (1%)
Strand=Plus/Plus
Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244
||| ||||| || |||||||| | |||| |||||||||||| || ||||| ||||| ||
Sbjct 2337659 ATCTTCCAACTGCTTTCCTGCAAAGATCAGTCGTTGCTGGTCTGGTGGAATACCTTCCTT 2337718
Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC-TTCGAGAGTAA 45303
||||||||||| |||| || | ||||| || | | ||| || ||||| |
Sbjct 2337719 GTCTTGAATTTTACTCTTGACATTGTCGATCGTGTCTGATGGGT-GACACTCAAGAGTTA 2337777
Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGC 45338
|| |||||||| ||| || ||||| ||||||
Sbjct 2337778 TTGTCTTGCCGGTCTTAGTCTTCACAAATATTTGC 2337812
>seq2
Length=5100555
Score = 96.9 bits (106), Expect = 3e-15
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244
||| ||||| |||||||| ||| | ||||||||||| |||||||| || ||||| || ||
Sbjct 3306704 ATCCTCCAACTGTTTTCCGGCGAAAATCAATCGTTGTTGGTCCGGAGGGATGCCCTCCTT 3306645
Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
|||||| ||||| || | || | ||||| || |||||||| || | ||| |
Sbjct 3306644 ATCTTGGATTTTGGACTTCACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAAGTGAT 3306585
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAA 45332
|| ||||| || ||||| || || |||
Sbjct 3306584 GGTCTTGCCCGTCAGAGTCTTCACGAAA 3306557
>seq35
Length=2560152
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
||||| || || | || ||| || |||| || || ||||| || || || |||||
Sbjct 153107 CCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGAT 153166
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| |||| || || | || || || ||| | |||||||| || ||||| |||||
Sbjct 153167 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGG 153226
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
||||| || || ||||| || || |||| || | ||||||||||||||| ||
Sbjct 153227 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 153286
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || | || || || || || ||||| || || || |||||
Sbjct 153287 TCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCAT 153333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452002996598560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |