Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq33 96.9 3e-15 seq2 96.9 3e-15 seq35 95.1 1e-14 >seq33 Length=3634720 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| || || ||| || |||| ||| || | || Sbjct 1474500 TGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGC 1474559 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||||||| |||||||| || || || || || || || || || || Sbjct 1474560 TTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTC 1474619 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | ||| || ||||||||||| || || || | || |||||||| Sbjct 1474620 GACTTGA-CGTTGTCGATGGTATCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 1474678 Query 45317 TAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351 || || ||||| || || ||||| ||| || || Sbjct 1474679 GAGGGTCTTTACGAAGATCTGCATACCGCCACGAA 1474713 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | |||| || ||||| || ||||| ||||| || || ||||| Sbjct 1474020 CCGCCGCGCAGACGGAGGACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTC 1474079 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | || |||| || || || ||| | || | ||||||||||| || || Sbjct 1474080 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGG 1474139 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || ||||| ||||| || || | || | || | ||||| || ||||| || Sbjct 1474140 ATACCCTCCTTATCCTGAATCTTGGACTTTA-CGTTGTCGATTGTGTCAGACGACTCTAC 1474198 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| | |||| || || ||||| || || || || || || ||||| Sbjct 1474199 TTCCAACGTAATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 1474246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/155 (73%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||| || |||||||| | |||| |||||||||||| || ||||| ||||| || Sbjct 2337659 ATCTTCCAACTGCTTTCCTGCAAAGATCAGTCGTTGCTGGTCTGGTGGAATACCTTCCTT 2337718 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC-TTCGAGAGTAA 45303 ||||||||||| |||| || | ||||| || | | ||| || ||||| | Sbjct 2337719 GTCTTGAATTTTACTCTTGACATTGTCGATCGTGTCTGATGGGT-GACACTCAAGAGTTA 2337777 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGC 45338 || |||||||| ||| || ||||| |||||| Sbjct 2337778 TTGTCTTGCCGGTCTTAGTCTTCACAAATATTTGC 2337812 >seq2 Length=5100555 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||| |||||||| ||| | ||||||||||| |||||||| || ||||| || || Sbjct 3306704 ATCCTCCAACTGTTTTCCGGCGAAAATCAATCGTTGTTGGTCCGGAGGGATGCCCTCCTT 3306645 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||| ||||| || | || | ||||| || |||||||| || | ||| | Sbjct 3306644 ATCTTGGATTTTGGACTTCACATTGTCGATCGTGTCCGAGGACTCGACCTCCAAAGTGAT 3306585 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAA 45332 || ||||| || ||||| || || ||| Sbjct 3306584 GGTCTTGCCCGTCAGAGTCTTCACGAAA 3306557 >seq35 Length=2560152 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | || ||| || |||| || || ||||| || || || ||||| Sbjct 153107 CCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGAT 153166 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| || || | || || || ||| | |||||||| || ||||| ||||| Sbjct 153167 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGG 153226 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || ||||| || || |||| || | ||||||||||||||| || Sbjct 153227 ATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 153286 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || || || || || ||||| || || || ||||| Sbjct 153287 TCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCAT 153333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002996598560