Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq12 167 3e-36 seq3 105 8e-18 >seq12 Length=4789767 Score = 167 bits (184), Expect = 3e-36 Identities = 1167/1860 (63%), Gaps = 65/1860 (3%) Strand=Plus/Plus Query 115519 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 115578 |||| | ||||||| ||||| ||| || | | |||||||||||||| || ||| Sbjct 3334003 TCAACGGTGAACTGGATGGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATTCCGGTC 3334062 Query 115579 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTT 115638 || || || |||||||| | | |||||| || | |||| | || || | Sbjct 3334063 TTAAGACCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATAGTCGGGTCT 3334122 Query 115639 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATA 115698 | ||| || ||||| || || ||||| |||||| || || || || ||||| Sbjct 3334123 TTCATATGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCGGCAGCCATC 3334182 Query 115699 TCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCT 115758 | | ||| | ||||||||| ||||| |||||||| || ||||| | Sbjct 3334183 TGGACAACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGGGCTTTGATATCTGCG 3334242 Query 115759 GGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCA-TGAGA---TCCTTCAT 115814 ||||| | || || |||| ||||| | || | || ||| | | |||||| Sbjct 3334243 GGGATGTTTGGAATGTTCTGGACGGAGCC----GTTTTCAGCAATGATACGGTTCTTCAT 3334298 Query 115815 ATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAAC 115874 | | ||||| | || || | ||||||| | ||| ||||| || Sbjct 3334299 GGCGTCAGACCACAAGCCCATGTCAACCAGATCCTTTAGGAGCCAAGGGTTGACGACCTG 3334358 Query 115875 AAACTCACCCGCGAGGG---TGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCA 115931 ||||| || || ||| ||||| | ||||| |||| ||||| ||||||||||| Sbjct 3334359 GAACTCGCCAGCAAGGACTCTGCGTT---GGTAGATATTGGATGTGTACGGCTCAAAGCA 3334415 Query 115932 CTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCT 115991 ||| |||||||||||||| |||| || ||| || ||||| ||||| | || || || Sbjct 3334416 CTCGTTGTTACCCAAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACT 3334475 Query 115992 GTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGC-T 116050 |||||| | || | || | || | ||||| || | ||||||| | || | Sbjct 3334476 GTTGCGAATGCCATGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCA-AAGATCGG 3334534 Query 116051 TTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAA 116110 | || | | | |||||| |||||||| || || ||||| || | || || || || Sbjct 3334535 AAGGCTTCACATTCCACATGTCAAACTGCAGAATGCCTTGAGATACAGGAGAGCCTTCGT 3334594 Query 116111 ATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGAT 116170 |||| |||||||| | ||| || | || | || ||| || || || | Sbjct 3334595 ATGTGGAGTATGGGCCTTGCTCCTTGGCAAGCTCCATGGAAGCAGTGAGAGCGGCATGGT 3334654 Query 116171 ACATTGTCTCAAAAATGCGAGCATTCATTGC-CTTG-GCCTCGTCGGAATCAAACGCGAG 116228 | ||||||||||| || | |||| || || | ||||| || || || | || Sbjct 3334655 AAATTGTCTCAAATATCTGCTTGTTCA--GCTCTCGTGCCTCAGGAGACTCGAAAGGCAG 3334712 Query 116229 ACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 116288 || | || |||| || ||||| || || |||| ||||| || | || | Sbjct 3334713 GCGAAGGGCTAGGAACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCCTGTGGCG 3334772 Query 116289 CATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348 ||| || || | || | ||||| || | || ||||| | | |||| | Sbjct 3334773 CATGTTGCTGTTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGATCTTATTCAA 3334832 Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 116408 ||| ||||| | || | || || ||||||| | | ||| | | || | Sbjct 3334833 GTTTCGAACAACAACTTCGGTAACATCGTGCAGCTTTTGGAAGTCATAGCAGC------C 3334886 Query 116409 TTCATTG------ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTC 116462 ||||||| ||| | || | ||| | || |||| || || || | | ||| Sbjct 3334887 TTCATTGTAGTCCACAAAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTC 3334946 Query 116463 ATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAA 116522 ||| | |||||| || || ||||| || | ||| || || |||||||| | Sbjct 3334947 ATCGGGGGCGCAGTACTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAG 3335006 Query 116523 GTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGT 116582 ||||| || || ||| || || ||||| ||||||||||| | || | || || Sbjct 3335007 ATTCTTCTGGTTGCTCTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGT 3335066 Query 116583 CTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGG 116641 || || |||| || || || || | ||| | | || | | || | ||| ||| Sbjct 3335067 TTCAGTCTGGGCCTCTAGGATGGCATACCAAAGCTTCTGTGCCTTG----ATGGTCTTG- 3335121 Query 116642 CTCGCCCCT------CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAG 116695 || |||| || ||| |||||| |||||| ||||| ||||| ||| || || Sbjct 3335122 --CGACCCTTGTTGAGCTTCTCATACTTTTCGTAGAGAGCCTCGAACTCGTCA-CCGTAG 3335178 Query 116696 C-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCA 116754 | || | || || || | | ||||| | |||| ||| | || || ||| Sbjct 3335179 CAGTCAGCCAGGCCGGGACATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTCA 3335238 Query 116755 ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT 116814 || |||||||||||||| || || ||||| || || ||||||||| || |||| || Sbjct 3335239 ACACGCTTCATGAAGAGATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACT 3335298 Query 116815 TCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGT 116874 ||||| | || || || || | |||| || || | | ||||| ||||| || Sbjct 3335299 TCTTCCTTGCCATGGTTCTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGC 3335358 Query 116875 TCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCC 116931 || ||||| | |||| | || ||| ||| | || | ||||| | || Sbjct 3335359 TCAAGGTAGATTGCGAAAGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCA 3335418 Query 116932 GTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCG 116990 || || || || || ||||| ||||||| ||| | || |||||| || ||| || Sbjct 3335419 GTGTTATTGAAGACTCGCAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCG 3335478 Query 116991 A-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACT 117049 | || || || | |||| | || | |||||||| | |||||||| || ||| || Sbjct 3335479 ATGTATGA-AC-CGGTGGCACGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCT 3335536 Query 117050 TTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTAT 117109 | ||||| ||| || | |||| || |||| || || || || |||| |||| Sbjct 3335537 TGGAGATCATTGCACAGGTCTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCA 3335596 Query 117110 TTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTG 117169 | ||| |||||||| |||| ||| | | || || || || ||||||||||||| Sbjct 3335597 TGTCGACTAGGAAGCATGAAGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTG 3335656 Query 117170 GTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGG 117227 | | || || ||| | | |||| ||||||| | |||||| || | ||| Sbjct 3335657 GCGAGGCATGTGTGA--AAAACTTGCTGGACATCAAGTTGTAGGTTTCAATGACTCGCTC 3335714 Query 117228 AA---TGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTC 117284 || ||||| ||| | ||||||| | || ||||| | ||||| |||||| || Sbjct 3335715 AACATTGTCTCCCCAG---ATACCGACAGCAACACGCATGATCATGTGCTGGGGTCGCTC 3335771 Query 117285 CATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344 | | | ||||| || | ||||||| |||| || || |||| ||| ||||| Sbjct 3335772 AACGATCTTGCCATCAAGTTTAAGGAGGTAGGATCTCTCTAAAGTTTTGAAACCGAAATA 3335831 >seq3 Length=2371949 Score = 105 bits (116), Expect = 8e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 |||||||||||||| || |||||||| || || ||||| |||||||||||||| || Sbjct 2245345 TGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAGACCTGGCATGAGGCCA 2245404 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 ||||||||||||||||| || | | ||| | || ||||||||| || || || Sbjct 2245405 CGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCTTCGACGGCA 2245464 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||||| |||| ||||| | || |||| Sbjct 2245465 GCGAAGGCAACAAGACGTTGAGCGAAGG 2245492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506923921760