Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3 104 4e-17 seq12 102 1e-16 >seq3 Length=2371949 Score = 104 bits (114), Expect = 4e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || ||||| || || || || || || |||||||| || ||||||| ||||||||| Sbjct 2245321 AATAGGAGACAGGCGAAATCAGTATGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAG 2245380 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | |||| || ||||||| |||||| || | ||| || |||| ||||| |||||| Sbjct 2245381 AATGTGAGACCTGGCATGAGGCCACGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCG 2245440 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || || ||||| || || ||||| || || || || || | | | | || | | || Sbjct 2245441 CTGAAGAAGATACCTTCGACGGCAGCGAAGGCAACAAGACGTTGAGCGAAGGTAGACTTC 2245500 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATG 160138 |||| |||| | ||||||| |||||||||||| |||| Sbjct 2245501 TTGTCGGTAATCCATCGAATGGCCCAGTCAGCCTTCTTTCTGATG 2245545 >seq12 Length=4789767 Score = 102 bits (112), Expect = 1e-16 Identities = 229/338 (68%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119 ||| || ||| ||| || ||| | || || |||||| ||| ||| || ||||| Sbjct 3335139 CTCATACTTTTCGTAGAGAGCCTCGAACTCGTCACCGTAGCAGTCAGCCAGGCCGGGACA 3335198 Query 205120 TTTTTTGGGACACATCAGAGACCACAT--CTGATCGTCTTTCACCCTCTCCATAAACAGG 205177 || |||||||||||||||| ||| || | | || | || || | || ||| || || Sbjct 3335199 TTCGTTGGGACACATCAGAGTCCA-ATCGCCGTTC-TTTTCAACACGCTTCATGAAGAGA 3335256 Query 205178 TCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTC 205237 || ||||||||| || || |||||||| || | || | | || | ||| ||||| Sbjct 3335257 TCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCATGGTTC 3335316 Query 205238 TTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCAT 205296 ||| | ||||| || || | | ||| || ||||| ||||| | | | || | Sbjct 3335317 TTTCGGAGGTCCA-TGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAA 3335375 Query 205297 TGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCG 205356 |||||||| | |||||| ||||| || ||||| |||| | ||||| ||||| Sbjct 3335376 AGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGAAGACTCG 3335435 Query 205357 CAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394 |||||| || | | |||||||| || || || |||| Sbjct 3335436 CAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGC 3335473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154842180160