Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq3 104 4e-17
seq12 102 1e-16
>seq3
Length=2371949
Score = 104 bits (114), Expect = 4e-17
Identities = 158/225 (70%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973
|| ||||| || || || || || || |||||||| || ||||||| |||||||||
Sbjct 2245321 AATAGGAGACAGGCGAAATCAGTATGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAG 2245380
Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033
| |||| || ||||||| |||||| || | ||| || |||| ||||| ||||||
Sbjct 2245381 AATGTGAGACCTGGCATGAGGCCACGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCG 2245440
Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093
|| || ||||| || || ||||| || || || || || | | | | || | | ||
Sbjct 2245441 CTGAAGAAGATACCTTCGACGGCAGCGAAGGCAACAAGACGTTGAGCGAAGGTAGACTTC 2245500
Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATG 160138
|||| |||| | ||||||| |||||||||||| ||||
Sbjct 2245501 TTGTCGGTAATCCATCGAATGGCCCAGTCAGCCTTCTTTCTGATG 2245545
>seq12
Length=4789767
Score = 102 bits (112), Expect = 1e-16
Identities = 229/338 (68%), Gaps = 6/338 (2%)
Strand=Plus/Plus
Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119
||| || ||| ||| || ||| | || || |||||| ||| ||| || |||||
Sbjct 3335139 CTCATACTTTTCGTAGAGAGCCTCGAACTCGTCACCGTAGCAGTCAGCCAGGCCGGGACA 3335198
Query 205120 TTTTTTGGGACACATCAGAGACCACAT--CTGATCGTCTTTCACCCTCTCCATAAACAGG 205177
|| |||||||||||||||| ||| || | | || | || || | || ||| || ||
Sbjct 3335199 TTCGTTGGGACACATCAGAGTCCA-ATCGCCGTTC-TTTTCAACACGCTTCATGAAGAGA 3335256
Query 205178 TCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTC 205237
|| ||||||||| || || |||||||| || | || | | || | ||| |||||
Sbjct 3335257 TCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCATGGTTC 3335316
Query 205238 TTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCAT 205296
||| | ||||| || || | | ||| || ||||| ||||| | | | || |
Sbjct 3335317 TTTCGGAGGTCCA-TGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAA 3335375
Query 205297 TGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCG 205356
|||||||| | |||||| ||||| || ||||| |||| | ||||| |||||
Sbjct 3335376 AGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGAAGACTCG 3335435
Query 205357 CAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394
|||||| || | | |||||||| || || || ||||
Sbjct 3335436 CAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGC 3335473
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795154842180160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |