Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq35 159 4e-34
seq33 127 2e-24
seq2 87.8 2e-12
>seq35
Length=2560152
Score = 159 bits (176), Expect = 4e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425
|||||||| || ||||| |||||| ||||| || |||||| || || ||||| || ||
Sbjct 153106 GCCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGA 153165
Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485
||| || || |||| |||||||||||||||||||| ||||| ||||| ||||| | |||
Sbjct 153166 TAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGG 153225
Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545
| || ||||||||| |||||| ||||| | | | |||||| || |||||
Sbjct 153226 GATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 153285
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | ||||| || || ||||| || ||||| || ||||| |||||
Sbjct 153286 CTCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCAT 153333
>seq33
Length=3634720
Score = 127 bits (140), Expect = 2e-24
Identities = 145/192 (76%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| ||||||||||| || || || | || ||||||||||||||||||||
Sbjct 1474512 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAG 1474571
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| ||||||||||| | || | | |||||||||| ||||||| ||||| |||
Sbjct 1474572 ATCAATCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTCGACTTGA-CGTT 1474630
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || || || || || || | |||||||| ||||| || || || || ||
Sbjct 1474631 GTCGATGGTATCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTTAC 1474690
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 1474691 GAAGATCTGCAT 1474702
Score = 104 bits (114), Expect = 3e-17
Identities = 126/169 (75%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || || || | || |||||||||||||| || ||
Sbjct 1474739 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAA 1474798
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||||||| | || | | |||||||||| ||||||| ||||| |||
Sbjct 1474799 GATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 1474857
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | | || || || ||||| || | |||||||| || || ||
Sbjct 1474858 TGTCGATAGTATCCGAAGACTCCACCTCAAGGGTGATGGTCTTTCCAGT 1474906
Score = 89.7 bits (98), Expect = 6e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||| | ||| |||||| || || |||||||| || || || || |||| ||
Sbjct 1474266 ACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTTCGACCGTCCTCC 1474325
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
| ||||||||| ||||| || | ||||||||||| | || | || |||||||||
Sbjct 1474326 AACTGCTTGCCCGCGAAGATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGA 1474385
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| ||| | | | | || ||| || || || || | ||||| || |||
Sbjct 1474386 ATCTTGGACTTTACGTTATCGATGGTATCGGATGACTCAACCTCGAGAGTGATCGTCTTG 1474445
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || || || ||||| |||||
Sbjct 1474446 CCGGTGAGGGTCTTGACGAAGATCTGCAT 1474474
>seq2
Length=5100555
Score = 87.8 bits (96), Expect = 2e-12
Identities = 128/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| |||||||| || ||||| || | || || | ||| || |||||||| |
Sbjct 3306738 CCTTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAA 3306679
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||| || || ||||| | || | || |||||| || ||| || ||| | |
Sbjct 3306678 TCAATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGT 3306619
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | |||||| || || || |||| |||||||| ||||||||||| || || || |
Sbjct 3306618 CGATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGA 3306559
Query 46584 A 46584
|
Sbjct 3306558 A 3306558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238145642720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |