Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq3 134 1e-26
seq33 131 2e-25
seq35 122 9e-23
seq2 84.2 2e-11
>seq3
Length=2371949
Score = 134 bits (148), Expect = 1e-26
Identities = 195/275 (71%), Gaps = 3/275 (1%)
Strand=Plus/Plus
Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227
|| ||||||||||| || || | |||||||| | ||||||||| || || |||
Sbjct 2245659 TATGTGTCGATGAGCAGAGAGTATGTCTCCGAGTGGATGTTCTCCATCATAATCTGGAAG 2245718
Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287
||||| ||||| || ||||| | ||| || || ||| | |||||| |||||
Sbjct 2245719 CCGTAGAAGCAGCGAGCCTCAGGGATCTGGACCTCGCTGCTGAATCTCTCGACGAGATTC 2245778
Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347
|||||||||||||| || |||||||| ||||||| | ||| |||||| | |
Sbjct 2245779 TCGTTGACGATGCCATCAGACGCGGCGAAGAAGGCCAAAATGTGTGAGATGAAGTATTTC 2245838
Query 133348 TCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404
|||| ||||| || | | ||| ||| | ||||||||||| || | ||||||
Sbjct 2245839 TCGTCGTCGTTGATCTTGTTGTTCCAATCGTGAAGATCCTTGGACAGATCAATCTCCTCA 2245898
Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
||||||| || ||||| ||||| || ||||||||
Sbjct 2245899 GCGGTCCAGAAGGACGCTTCGGCCTTCTTGTACAT 2245933
>seq33
Length=3634720
Score = 131 bits (144), Expect = 2e-25
Identities = 160/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || |||||||| || ||||| ||||| ||||||||| | || |||||| | |
Sbjct 1474702 ATGCAGATCTTCGTAAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 1474643
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || || |||| ||||| |||||||| ||| | |||||
Sbjct 1474642 GATACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCA 1474584
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||| ||||| ||||| || || | || |||||| |||||||||
Sbjct 1474583 GCAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAA 1474524
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| |||||| | || || || ||||| || ||
Sbjct 1474523 CATCCAGAAGGAATCTACTCTTCACTTGGTTCTCCG 1474488
Score = 109 bits (120), Expect = 5e-19
Identities = 165/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| || || ||||| || | || || ||| | |
Sbjct 1474246 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATTACGTTGGAAGTAGAGTCGTCT 1474187
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | |||| ||||| || || | || || ||||| || || | ||||
Sbjct 1474186 GACACAATCGACAACG--TAAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCAGACC 1474129
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| || || || || | ||| || || |||||||| |||| |||||||| | ||||||||
Sbjct 1474128 AGCAACGTCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACA 1474069
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472
||||||| ||||| | ||||| || || || || ||| || | |||||||
Sbjct 1474068 ACATCCAGAAGGAGTCTACGCTCCACTTAGTCCTCCGTCTGCGCGGCGGCC 1474018
Score = 107 bits (118), Expect = 2e-18
Identities = 156/217 (72%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| || ||||| |||| || ||| | ||
Sbjct 1474474 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCC 1474415
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | | |||| ||||| || || | ||||| ||||| || || | ||||
Sbjct 1474414 GATACCATCGATAACG--TAAAGTCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACC 1474357
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| ||||| | ||||||||| ||| |||| |||| || || ||| |||||||
Sbjct 1474356 AGCAGCGACTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGAACGCTCTCGGACTACA 1474297
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||| || ||||| | || || ||| | || || ||
Sbjct 1474296 ACATTCAGAAGGAGTCTACCCTCCATCTCGTCCTCCG 1474260
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| |||||||||||| | ||||| ||||| || || | || |||||
Sbjct 1474846 AAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGCCTGATCTTTGCTGGCAAG 1474787
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || || | || |||||| ||||||||||||||| ||||| | || || |||
Sbjct 1474786 CAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTTCAT 1474727
Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470
| || || ||| | | |||||
Sbjct 1474726 CTCGTCCTCCGTCTTCGTGGCGG 1474704
>seq35
Length=2560152
Score = 122 bits (134), Expect = 9e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| ||||| || ||||| || || |||||| |||| || ||| | ||
Sbjct 153333 ATGCAGATCTTCGTCAAAACCCTTACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCC 153274
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362
|||| | | | | | || || |||| ||||| ||||| || |||||| |||||
Sbjct 153273 GACACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCAT-CCCGCCAGACCA 153215
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| | || | ||| ||||| ||||| || |||| || ||||| || |||||
Sbjct 153214 ACAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTATCTGATTACAA 153155
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||| || ||||| |||| |||| ||||||||||| | |||| |||
Sbjct 153154 CATTCAGAAGGAGTCGACTTTGCACCTGGTGCTGCGTCTACGAGGAGGC 153106
>seq2
Length=5100555
Score = 84.2 bits (92), Expect = 2e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| |||||||| | || |||||| || | |||| |
Sbjct 3306558 TTCGTGAAGACTCTGACGGGCAAGACCATCACTTTGGAGGTCGAGTCCTCGGACACGATC 3306617
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || ||||||| || || ||||| || || | |||||||| || |
Sbjct 3306618 GACAATGTGAAGTCCAAAATCCAAGATAAGGAGGGCATCCCTCCGGACCAACAACGATTG 3306677
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|||| ||| || |||||| |||| || | || || || |||||||||||||| |||
Sbjct 3306678 ATTTTCGCCGGAAAACAGTTGGAGGATGGCCGAACTCTTTCTGACTACAACATCCAGAAG 3306737
Query 38433 G 38433
|
Sbjct 3306738 G 3306738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172574922240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |