Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 134 1e-26 seq33 131 2e-25 seq35 122 9e-23 seq2 84.2 2e-11 >seq3 Length=2371949 Score = 134 bits (148), Expect = 1e-26 Identities = 195/275 (71%), Gaps = 3/275 (1%) Strand=Plus/Plus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 || ||||||||||| || || | |||||||| | ||||||||| || || ||| Sbjct 2245659 TATGTGTCGATGAGCAGAGAGTATGTCTCCGAGTGGATGTTCTCCATCATAATCTGGAAG 2245718 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 ||||| ||||| || ||||| | ||| || || ||| | |||||| ||||| Sbjct 2245719 CCGTAGAAGCAGCGAGCCTCAGGGATCTGGACCTCGCTGCTGAATCTCTCGACGAGATTC 2245778 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 |||||||||||||| || |||||||| ||||||| | ||| |||||| | | Sbjct 2245779 TCGTTGACGATGCCATCAGACGCGGCGAAGAAGGCCAAAATGTGTGAGATGAAGTATTTC 2245838 Query 133348 TCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 |||| ||||| || | | ||| ||| | ||||||||||| || | |||||| Sbjct 2245839 TCGTCGTCGTTGATCTTGTTGTTCCAATCGTGAAGATCCTTGGACAGATCAATCTCCTCA 2245898 Query 133405 ACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || ||||| ||||| || |||||||| Sbjct 2245899 GCGGTCCAGAAGGACGCTTCGGCCTTCTTGTACAT 2245933 >seq33 Length=3634720 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || ||||| ||||| ||||||||| | || |||||| | | Sbjct 1474702 ATGCAGATCTTCGTAAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 1474643 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || |||| ||||| |||||||| ||| | ||||| Sbjct 1474642 GATACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCA 1474584 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| ||||| ||||| || || | || |||||| ||||||||| Sbjct 1474583 GCAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAA 1474524 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| |||||| | || || || ||||| || || Sbjct 1474523 CATCCAGAAGGAATCTACTCTTCACTTGGTTCTCCG 1474488 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||| || | || || ||| | | Sbjct 1474246 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATTACGTTGGAAGTAGAGTCGTCT 1474187 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| ||||| || || | || || ||||| || || | |||| Sbjct 1474186 GACACAATCGACAACG--TAAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCAGACC 1474129 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || || | ||| || || |||||||| |||| |||||||| | |||||||| Sbjct 1474128 AGCAACGTCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACA 1474069 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||| ||||| | ||||| || || || || ||| || | ||||||| Sbjct 1474068 ACATCCAGAAGGAGTCTACGCTCCACTTAGTCCTCCGTCTGCGCGGCGGCC 1474018 Score = 107 bits (118), Expect = 2e-18 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| || ||||| |||| || ||| | || Sbjct 1474474 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCC 1474415 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| ||||| || || | ||||| ||||| || || | |||| Sbjct 1474414 GATACCATCGATAACG--TAAAGTCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACC 1474357 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | ||||||||| ||| |||| |||| || || ||| ||||||| Sbjct 1474356 AGCAGCGACTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGAACGCTCTCGGACTACA 1474297 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||| || ||||| | || || ||| | || || || Sbjct 1474296 ACATTCAGAAGGAGTCTACCCTCCATCTCGTCCTCCG 1474260 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| |||||||||||| | ||||| ||||| || || | || ||||| Sbjct 1474846 AAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGCCTGATCTTTGCTGGCAAG 1474787 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || || | || |||||| ||||||||||||||| ||||| | || || ||| Sbjct 1474786 CAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTTCAT 1474727 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 | || || ||| | | ||||| Sbjct 1474726 CTCGTCCTCCGTCTTCGTGGCGG 1474704 >seq35 Length=2560152 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || ||||| || || |||||| |||| || ||| | || Sbjct 153333 ATGCAGATCTTCGTCAAAACCCTTACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCC 153274 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | | || || |||| ||||| ||||| || |||||| ||||| Sbjct 153273 GACACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCAT-CCCGCCAGACCA 153215 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | ||| ||||| ||||| || |||| || ||||| || ||||| Sbjct 153214 ACAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTATCTGATTACAA 153155 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || ||||| |||| |||| ||||||||||| | |||| ||| Sbjct 153154 CATTCAGAAGGAGTCGACTTTGCACCTGGTGCTGCGTCTACGAGGAGGC 153106 >seq2 Length=5100555 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| |||||||| | || |||||| || | |||| | Sbjct 3306558 TTCGTGAAGACTCTGACGGGCAAGACCATCACTTTGGAGGTCGAGTCCTCGGACACGATC 3306617 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || ||||||| || || ||||| || || | |||||||| || | Sbjct 3306618 GACAATGTGAAGTCCAAAATCCAAGATAAGGAGGGCATCCCTCCGGACCAACAACGATTG 3306677 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 |||| ||| || |||||| |||| || | || || || |||||||||||||| ||| Sbjct 3306678 ATTTTCGCCGGAAAACAGTTGGAGGATGGCCGAACTCTTTCTGACTACAACATCCAGAAG 3306737 Query 38433 G 38433 | Sbjct 3306738 G 3306738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172574922240