Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq12 385 6e-102 seq33 141 1e-28 seq18 131 2e-25 >seq12 Length=4789767 Score = 385 bits (426), Expect = 6e-102 Identities = 1050/1599 (66%), Gaps = 39/1599 (2%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGAC--CATCTTTTCAATGTCTTCTTTCG 6626 ||||| ||||| || ||||| || || || |||| ||| || || || || || | Sbjct 2512667 TCATCCTCATCCTTGTACTTCTCGGCTTC--GGACAACATGCGCTCGATATCCTCCTTGG 2512724 Query 6627 ATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 | | | ||||| || || || || |||||| | ||| || || | | |||| || Sbjct 2512725 ACAGGCGTCCCTTGTCGTTGGTGATGACAATCTTGTTGGACTTGCCGGTGCCCTTCTCGA 2512784 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 || || |||| |||||||| ||||||| |||||| | || | || || || Sbjct 2512785 TGGCGGAAACGTTCATGATACCATTGGCATCAAGATCGAAGGTGACCTCGATCTGAGGAA 2512844 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 ||| | ||||| | ||| || || || | || || | || || | |||| ||| Sbjct 2512845 CACCTCGGGGTGCAGGTGGGATGCCGGTAAGCTCGAACTTGCCGAGAAGGTTGTTGTCCT 2512904 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTG 6866 | | || ||| ||||| || ||||| | || ||| |||| || || ||| Sbjct 2512905 TGGTGCGCTGACGCTCACCCTCGTAGACCTGGATGAGCACACCAGGCTGGTTGTCTGAGA 2512964 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 || ||||||| | ||||| | || || || || |||| ||| || | | || Sbjct 2512965 AGGTAGAGAAGACCTCGGACTTCTTGGTAGGGATAGTGGTGTTTCGCGGGATGAGCTTGG 2513024 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| || ||||| ||| |||| || ||||| || || | || || | || || | Sbjct 2513025 TCATCATGCCACCAGCAGTCTCGATACCGAGAGAGAGCGGGGCAACATCGAGAAGCAAGA 2513084 Query 6987 GGTCTTGAACAGATTCGTTCCCTT-----------CACCCGTTAAGATGGCGGCTTGGAC 7035 ||| | | |||||||| |||| | ||||||||||| ||||| Sbjct 2513085 --TCTCGC------TGGTTCCCTTGGAGGAGGTGTCACCAGACAAGATGGCGGCCTGGAC 2513136 Query 7036 CGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTT 7095 | || ||||| || || |||||||||||||| || | || || | || || ||||| Sbjct 2513137 AGCGGCGCCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTTCCGTT 2513196 Query 7096 AAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAAC 7155 || || || | | | | || ||| ||||| || || || || ||||| | || Sbjct 2513197 GAAGTAGTCGGTGATGAGCTTCTGGATTCGGGGGATACGGGTGGAACCGCCGACAAGGAC 2513256 Query 7156 GATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGA-AGTGTTTTTTCGACAGGTT 7214 ||| || | || | || || |||||||| | || ||| || |||||||| | Sbjct 2513257 GATCTCGTGGACCTGGGACTTGTCGATCTTGGCATC-CGAGAGGACACGGTCGACAGGCT 2513315 Query 7215 CCA---TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGG 7271 | | || ||||| | ||| |||| || || || || || ||||| |||| Sbjct 2513316 GGAGGGTGGAT---CGGAAGAGATCCTGGCACAACTCTTCGAATCGGGCTCGGGTGATGG 2513372 Query 7272 ATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCG 7331 | || |||||||||| || || | | || || || || |||| || || |||| || Sbjct 2513373 AGGTGTAGAAATCAATACCCTCAAAGAGAGAGTCGATCTCGATGGAGGTCTGGGCCGACG 2513432 Query 7332 AAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGT 7391 | || | || ||||| || ||||| || || ||||| | || || || ||||| | || Sbjct 2513433 AGGACAGGGTGCGCTTGGCACGCTCGCAGGCAGTTCGGAGTCGTCGCAGCGCACGGGCGT 2513492 Query 7392 TACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTC 7451 | ||| | || ||||| || || || || ||||| | |||||| | || | Sbjct 2513493 TGGAGGACAGGTCCTTCTTGTGCTTGCGCTTGAACTCGTTGACGAAGTGGTTGACCAGAC 2513552 Query 7452 TCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGA 7511 ||||| || |||||||||||||| ||||| || ||||||| ||||| || |||| Sbjct 2513553 GGTTGTCGAAGTCCTCACCACCCAAGTGGGTATCACCAGCGGTCGACTTGACCTCGAAGA 2513612 Query 7512 TACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGA 7571 ||||| | || || | | | |||||||| || || |||||||| || ||||| |||| Sbjct 2513613 TACCTTCCTCGATAGTCAGGAGAGAAACATCGAAAGTGCCACCACCGAGATCAAAGATGA 2513672 Query 7572 GTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631 | || || ||| | || | ||||| || |||||||| || || || || || || | Sbjct 2513673 GAACATTTCGCTCGCCCTCAATCTTCTTGTCAAGACCGTAAGCAATGGCGGCAGCAGTAG 2513732 Query 7632 GTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 | ||||| || || || ||| ||| ||||| || || | || || || || |||| Sbjct 2513733 GCTCATTGATGATTCGGAGAACGTTGAGGCCTGCGATGAGACCAGCGTCCTTGGTGGCTT 2513792 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 |||| || |||||||| |||||||| ||||| || | || |||| |||| || Sbjct 2513793 GTCGCTGAGAATCGTTGAAGTAGGCGGGGACAGTGATAACGGCGTTGTTGACCGGGACAC 2513852 Query 7752 CGAGATACGATTCCGCGATATCTTTCAT-TTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 | || || || || || | ||| ||| ||| ||| | ||| || ||||| ||| Sbjct 2513853 CAAGGTAAGACTCAGCAGTCTCTCGCATCTTTACCAAG-ATCATGGAGCTGATCTCCTCA 2513911 Query 7811 GCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCA 7870 | | || || || || || || || || | || | || || || | || Sbjct 2513912 GGTGTGAAGGTCTTGGTCTCGCCCTTGAACTCGATCTCGACCACAGGCTTGCTC---GCC 2513968 Query 7871 CCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAAC 7930 | ||| | ||| | | | | ||||||||| | || |||| ||| || ||| Sbjct 2513969 TTGTCGATGATCTTGAATGGGAAGTGCTTCATATCGGCCTGCACCTCCGAGTCGGAGAAC 2514028 Query 7931 TTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGG 7990 || | || || || ||||| ||||| || |||||||| | ||||||||| || |||| Sbjct 2514029 TTGCGGCCAATGAGGCGCTTCGCATCGAAGACTGTGTTGTGGGGGTTCATCGCGACTTGG 2514088 Query 7991 TTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG 8050 ||||| || || || ||||| ||||| || | ||||| || || ||| |||| ||| Sbjct 2514089 TTCTTGGCGGCATCTCCGATCAGACGCTC---GGTGTCCGTGAATGCCACGAACGACGGG 2514145 Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCG 8110 || |||||||| || ||||||||||| || || || | | || | | ||| || Sbjct 2514146 GTGGTTCGATTTCCCTGGTCGTTCGCGATGATCTCGATTCTATCCTCGCGATAGATACCA 2514205 Query 8111 ACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCT 8149 || ||||| || || ||||| | ||| |||||||| ||| Sbjct 2514206 ACACACGAGTATGTGGTTCCAAGATCGATACCGATGGCT 2514244 >seq33 Length=3634720 Score = 141 bits (156), Expect = 1e-28 Identities = 328/488 (67%), Gaps = 10/488 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||| | || ||||| || || ||||| ||| || |||| ||| Sbjct 1113204 ATCGAAATCCTCACCACCGAGATGGGTATCACCGGCAGTCGCCAGGACCTCGAAGACACC 1113145 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || ||| | || || ||||| || ||||||||||| || || | || | Sbjct 1113144 CTGGTCGATGGAGAGCAGGGAGACATCGAAAGTACCACCACCGAGATCGTA---GACAAT 1113088 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || | || ||| | | | |||| || |||||||| ||||| || || ||||| || | Sbjct 1113087 GATC-TGGCGTTCGCCATCGGTCTTGTCAAGACCGTATGCGATGGCAGCGGCCGTAGGCT 1113029 Query 7635 CATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 | || | ||||| || |||| || || || ||||| | | || || || || || ||| Sbjct 1113028 CGTTGACAATACGGAGGACA-TTGAGACCGGCAATGATACCGGCGTCCTTGGTGGCCTGT 1112970 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 | || ||||| |||||||| ||||| || ||||| |||| ||||| ||||| || Sbjct 1112969 CTCTGGTTGTCGTTGAAGTAGGCTGGGACAGTGACGACGGCGTGAGTGACCTTCTTGCCC 1112910 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC 7813 || || | || |||| || ||||| || |||| ||| | || | || |||| Sbjct 1112909 AGGTAGGCCTCAGCGACCTCCTTCATCTTTCCGAGAATCATGGCGGAGACTTCCTCAGGG 1112850 Query 7814 GCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873 | ||||| || || ||||| | || |||| | ||||| || || | | Sbjct 1112849 GTAAACTTCTTGTCCTCGCCGTTGACTTCGACTTGGACGATGGGCTT---GCCATCCTTG 1112793 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 || ||||| || | ||| | |||||||| |||||| | | ||| || |||||| Sbjct 1112792 TTGAGGACCTTGTATGGCCAGTGCTTCATATCAGCTTGGATGTCCTTGTCGGAGAACTTT 1112733 Query 7934 CTTCCGAT 7941 | ||||| Sbjct 1112732 CGGCCGAT 1112725 >seq18 Length=3787933 Score = 131 bits (144), Expect = 2e-25 Identities = 361/545 (66%), Gaps = 15/545 (3%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| || || |||||||| || | | |||||| ||| ||| | | || Sbjct 1837298 AGCTCCTCGAATCGGGCACGGGTGATCTGCATCTGGAAATCCTGGCCATCGAAGAGAGAG 1837239 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| || ||||| | || || || | || | |||||||| || || || || | Sbjct 1837238 TCAATCTCGATGGTAGCCTGGGCACCGCTG--GACAGGGTTCGCTTGGCACGTTCGCAGG 1837181 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGT-TTACGT 7420 | || || | | || |||||||| | | ||| | ||||| ||||| ||| || || Sbjct 1837180 CAGTCCGAAGTCTTCGGAGGGCACGGGCATCACCAGTGATATCCTTCTT-TGTCTTTCGG 1837122 Query 7421 TTAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTG 7479 || || | | |||| |||| |||| | | ||||||||| | ||||||||||| Sbjct 1837121 AGGAAGTCCTTCTTGCAGTGGTCGA-GGAGGTTAGTATCGAAATCCTGTCCACCCAAGTG 1837063 Query 7480 TGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAAC 7539 || || || ||||| || ||||| || | ||| || | ||||| | | ||| || Sbjct 1837062 AGTGTCACCAGCGGTGGCCTTGACAGTGAAAACACCGCCCTGGATGTTGAGGAGCGACAC 1837003 Query 7540 ATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT 7599 ||| || ||||| ||||| || || |||| || || || || | | | | ||| Sbjct 1837002 ATCGAAGGTACCGCCACCGAGATCGTAAATCAGAACATTTCGCTCCTTGCC--AGACCTT 1836945 Query 7600 -----ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 | |||||||| ||||| || || || || ||||| || || ||||| || | Sbjct 1836944 CCGGAGCCCAGACCGTAGGCGATGGCTGCGGCAGTAGGTTCGTTGATGATACGGAGCACG 1836885 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || ||||| | | || || || || || || ||||| ||||| |||||| Sbjct 1836884 TTAAGTCCGGCAATGGCACCGGCGTCCTTGGTAGCCTGACGTTGGTTGTCGTTGAAGTAG 1836825 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || || | ||| || | | || ||||| ||||| | | ||||| || || Sbjct 1836824 GCAGGCACGGTGATGACGGCCTTCTCAACCTTCTTTCCGAGCTTCACCTCCGCAATCTCC 1836765 Query 7775 TTCAT 7779 ||||| Sbjct 1836764 TTCAT 1836760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132514190240