Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq12 201 1e-46 seq3 96.9 4e-15 >seq12 Length=4789767 Score = 201 bits (222), Expect = 1e-46 Identities = 956/1501 (64%), Gaps = 35/1501 (2%) Strand=Plus/Minus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTG---TC-TT 111601 ||||| ||| |||| || | |||| | |||||||| | ||| ||||| || || Sbjct 3335831 TATTTCGGTTTCAAAACTTTAGAGAGATCCTACCTCCTTAAACTTGATGGCAAGATCGTT 3335772 Query 111602 GATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATAT 111661 || || || ||| ||||| ||||||| || || |||||||| || || || | Sbjct 3335771 GAGCGA----CCCCAGCACATGATCATGCGTGTTGCTGTCGGTATCTGGGGAGACAATGT 3335716 Query 111662 TGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACC 111721 ||| || | || || ||| || ||||||| | | |||| || || | || Sbjct 3335715 TGAGCGAGTCATTGAAACCTACAACTTGATGTCCAGCAAGTTTTTCACACATGCCTCGCC 3335656 Query 111722 AACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAA 111781 |||||||||||| || || || || | ||| |||| || ||||| | | | Sbjct 3335655 AACCCTCTTCAATGCGGGCACCCCTCAGGCTCAACTGTCTTCATGCTTCCTAGTCGACAT 3335596 Query 111782 CAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAA 111841 ||||| || || | |||||||||| ||| |||| ||||| ||||| || Sbjct 3335595 GAAGGATGACAGCATTGAGGGCATTTACGACACCCTCAAGACCTGTGCAATGATCTCCAA 3335536 Query 111842 GTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAG 111901 | |||||||||||| || | ||||||| | || | |||| | || || Sbjct 3335535 GATGGCTGGTGGTATTGGCCTCAACATCCACCGTATCCGTGCCACCGGTTCATACATCGC 3335476 Query 111902 AGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 111961 || || ||||| || | ||| | ||||| ||||| || || || || ||| || Sbjct 3335475 GGGCACCAATGGCACTTCCAACGGTGTCATTCCCATGCTGCGAGTCTTCAATAACACTGC 3335416 Query 111962 GCGCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGA 112015 || ||||| | |||| ||| ||| | || | | || ||||| |||| ||||| Sbjct 3335415 TCGTTATGTGGATCAAGGTGGCAACAAGCGCC-CAGGCG--CTTTCGCAATCTACCTTGA 3335359 Query 112016 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGA 112075 ||| ||||| ||||| | | |||||| | || | || ||||| || | || || Sbjct 3335358 GCCTTGGCATGCGGACGTGTTCGAGTTCATGGACCTCCGAAAGAACCATGGCAAGGAAGA 3335299 Query 112076 GGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 112135 | || || ||||||||| ||| || |||||||| ||||||||||||||| | || Sbjct 3335298 AGTTCGCGCACGTGATCTCTTCCTCGCCCTGTGGATTCCTGATCTCTTCATGAAGCGTGT 3335239 Query 112136 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGC 112195 ||| ||| ||| ||||| |||| | ||||| || | ||||| || | || Sbjct 3335238 TGAAAAGAACGGCGATTGGACTCTGATGTGTCCCAACGAATGTCCCGGCCTGGCTGACTG 3335179 Query 112196 CGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAG--AAAGTCGGGCGACT 112253 | ||||| ||||| || || |||||| |||||| || |||| || ||| | Sbjct 3335178 CTACGGTGACGAGTTCGAGGCTCTCTACGAAAAGTATGA-GAAGCTCAACAAGGGTCGC- 3335121 Query 112254 GCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGG 112312 ||| | | || | || | | ||| | || || || || | || || || || || Sbjct 3335120 AAGACCAT-CAAGGCACAGAAGCTTTGGTATGCCATCCTAGAGGCCCAGACTGAAACCGG 3335062 Query 112313 TACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGG 112372 | || | ||||| |||||||| || || || | ||||| || || |||||| | || Sbjct 3335061 AAACCCTTTCATGCTCTACAAAGATGCTTGCAATCGCAAGAGCAACCAGAAGAATCTTGG 3335002 Query 112373 TGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432 ||| || ||||| ||||| || || ||| | || | | | |||||| Sbjct 3335001 CACCATCCGCAGCTCCAATCTCTGCACGGAGATCATCGAGTACTGCGCCCCCGATGAGGT 3334942 Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC 112492 || || || ||| | || || | || | || | |||||| | | | | ||| | Sbjct 3334941 CGCCGTCTGCAACTTGGCTTCGCTGGCCTTGCCGTCCTTTGTGGA-CTACA-ATGAAGGC 3334884 Query 112493 --ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGA 112550 | ||| | |||| || ||||| ||||| || ||| |||| | || | Sbjct 3334883 TGCTATGACTTCCAAAAGCTGCACGATGTTACCGAAGTTGTTGTTCGAAACTTGAATAAG 3334824 Query 112551 GTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGT 112610 | || || || | ||||||||| | || | || || ||| | ||| | Sbjct 3334823 ATCATCGACGTCAACTACTACCCCGTTCCGGAAGCACAGAACAGCAACATGCGCCACAGG 3334764 Query 112611 CCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT 112670 || |||||| |||| || || ||||| || |||| ||| | ||||| | || Sbjct 3334763 CCCATTGGTGTCGGCGTTCAGGGTCTTGCAGATGCGTTCCTAGCCCTTCGCCTGCCTTTC 3334704 Query 112671 GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCT 112730 || || || || || | || || |||||||||||||| || || |||||| Sbjct 3334703 GAGTCTCCTGAGGCACGAGAGCTGAACAAGCAGATATTTGAGACAATTTACCATGCCGCT 3334644 Query 112731 CTTGAGGCGAGTTC---GGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGT 112787 || || ||| |||| | || ||| | || ||||| || | || || Sbjct 3334643 CTCACTGC---TTCCATGGAGCTTGCCAAGGAGCAAGGCCCATACTCCACATACGAAGGC 3334587 Query 112788 TCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCA 112846 ||||| | || ||||| | || || ||||| |||| |||| |||| || | || Sbjct 3334586 TCTCCTGTATCTCAAGGCATTCTGCAGTTTGACATGT-GGAATGTGAAGCCTTCCGATCT 3334528 Query 112847 CTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 112906 | ||||||| | || ||||| | ||||||| | | || |||| |||||||| | Sbjct 3334527 TTGGGACTGGGCATCGCTGAAGGAGCAAATCAAGGCGCATGGCATTCGCAACAGTCTGCT 3334468 Query 112907 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 112966 | ||||||||||| || ||| || | || ||||||||||| || || |||||||| Sbjct 3334467 AGTAGCACCAATGCCTACCGCCAGTACTTCCCAGATCTTGGGTAACAACGAGTGCTTTGA 3334408 Query 112967 ACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 113026 || ||||| | || ||||| | | ||| ||| || || ||||| | | ||||| Sbjct 3334407 GCCGTACACATCCAATATCTACCAACGCAGAGTCCTTGCTGGCGAGTTCCAGGTCGTCAA 3334348 Query 113027 C 113027 | Sbjct 3334347 C 3334347 >seq3 Length=2371949 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/216 (72%), Gaps = 10/216 (5%) Strand=Plus/Minus Query 102109 CAGTTCCATGTATTCA-AAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAG 102164 ||||||| || ||| |||||| || || ||||| || ||| || || | ||| Sbjct 2245555 CAGTTCC-TGCCATCAGAAAGAAGGCTGACTGGGCCATTCGATGGATTACCGACAAGAAG 2245497 Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 || | |||| ||| | || || | || || || || || |||||||||||| Sbjct 2245496 TC---TACCTTCGCTCAACGTCTTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGC 2245440 Query 102225 GGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 ||| |||| ||| | || | ||| | |||||||| || ||||||||||||||| || Sbjct 2245439 GGTGCCTT-TGCTTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCAGGTCTCACATT 2245381 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCA 102319 |||||||||||| ||||| || |||||||| ||||| Sbjct 2245380 CTCCAACGAGCTCATCTCGCGAGACGAGGGTCTCCA 2245345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742120665920