Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq12 116 4e-21 seq15 93.3 5e-14 >seq12 Length=4789767 Score = 116 bits (128), Expect = 4e-21 Identities = 335/508 (66%), Gaps = 17/508 (3%) Strand=Plus/Plus Query 110574 GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGG 110633 || |||||| | || | ||||| || || ||||| | ||||||||| || ||||| Sbjct 3335202 GTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTCAACACGCTTCATGAAGAGATCAGG 3335261 Query 110634 AATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCG 110693 |||||||| || ||| || ||||| ||| | ||||| | || ||||| || Sbjct 3335262 AATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCATGGTTCTTTCG 3335321 Query 110694 TAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC 110753 || |||| || || | | |||| ||||| || || || |||| |||| | || Sbjct 3335322 GAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAAAGCGCC 3335381 Query 110754 ------CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAG 110807 ||| | ||| || | ||||| || || ||| ||||||||| | || Sbjct 3335382 TGGGCGCTTGTTGCCACCT---TGATCCACATAACGAGCAGTGTTATTGAAGACTCGCAG 3335438 Query 110808 CATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT-TCTGGACTTATTGGCAC 110866 ||| ||||| | || | ||| ||||| || ||| || | || || | ||||| Sbjct 3335439 CATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGTATGAACCGGT-GGCAC 3335497 Query 110867 GAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCT 110925 | || |||||| | | ||||||||||| ||| ||| || |||||| ||| Sbjct 3335498 GGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCTTGGAGATCATTGCACAGGTCT 3335557 Query 110926 GTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAA 110985 |||| || | ||||| || ||||| || |||| || | | ||| ||||| ||| Sbjct 3335558 -TGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGCATGAA 3335616 Query 110986 GACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGA 111045 |||| |||| |||| || |||||||||||||| || || | ||||| ||| | | Sbjct 3335617 GACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTGTGA--AAA 3335674 Query 111046 CCTTG--GGACATCTTGTTGTATGTGTC 111071 |||| ||||||| |||||| || || Sbjct 3335675 ACTTGCTGGACATCAAGTTGTAGGTTTC 3335702 >seq15 Length=4255712 Score = 93.3 bits (102), Expect = 5e-14 Identities = 274/417 (66%), Gaps = 13/417 (3%) Strand=Plus/Minus Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG 11647 ||| ||| |||||||||||||| || | |||||| | || || ||||| |||||| Sbjct 2058980 TGTTGAAGCCGTCCATTTCTGTCAGGATCTGGTTTAGAGTAGCCTCCCGCTCGTCGTTGC 2058921 Query 11648 AGGGCATACCA---CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATA 11704 | ||| | ||| | ||| | |||| |||||||||||||||||||| | Sbjct 2058920 CGCCCATTCTGTTGCCTTCTTGTCGCGATCTGCCGATGGCGTCAATCTCATCGATGAAGA 2058861 Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764 ||| || || || ||||| | || || || || || || | || | Sbjct 2058860 TGATGCATGGCGCATTCTTTCGTGCGGTAGCAAACAGATCTCGCACTCGGGATGGCCCGA 2058801 Query 11765 CACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGA 11822 | || ||||||||||| || || | | | || |||||||| ||| ||||| || Sbjct 2058800 CTCCGACGAACATCTCGACAAACTCGGAACCGC-TCACACTGAA-GAACGGAACTCCTGA 2058743 Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 || || || | || || || || |||||||| || ||||| | || || |||| Sbjct 2058742 TTCGCCTGCAGTAGCCTTGGCCAGCAGCGTCTTACCTGTTCCAGGGGGCCCGGCCAGAAT 2058683 Query 11883 GGCGCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAA 11939 ||| || || ||||| || || || ||| | | ||||||| ||| |||| ||||| Sbjct 2058682 GGCACCGCGAGGGATTTTAGCTCCTAGCCTTTC---GAAGCGCTCGGGCGTCTTCAGGAA 2058626 Query 11940 GTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGGTGAA 11996 | ||||| |||| | ||| | |||||| || || || | ||||||| ||| Sbjct 2058625 GCTCACAAACTCCATGATTTCTTGCTTGGCTTCATCCATGCCAGCGACATCGGCGAA 2058569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975734960800