Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq12 176 5e-39 seq3 95.1 1e-14 >seq12 Length=4789767 Score = 176 bits (194), Expect = 5e-39 Identities = 1136/1809 (63%), Gaps = 61/1809 (3%) Strand=Plus/Plus Query 105558 TGAACTGAATTGGGCGC-GCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGT 105616 ||||||| || |||||| ||| ||| | || ||||| |||||||| |||||||| || Sbjct 3334010 TGAACTGGAT-GGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATTCCGGTCTTAAGA 3334068 Query 105617 CCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATG 105676 || | ||||| || | |||||| | || |||| ||| || || || ||| Sbjct 3334069 CCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATAGTCGGGTCTTTCATA 3334128 Query 105677 AAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAATG 105736 | |||| ||| ||| ||||||||| ||| || | || ||||| | | Sbjct 3334129 TGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCGGCAGCCATCTG---G 3334185 Query 105737 ACATCCTTCATCTT---GATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGGG 105793 ||| | | || ||||||||| || || |||||| |||||||| | ||| Sbjct 3334186 ACAACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGGGCTTTGATATCTGCGGGG 3334245 Query 105794 ATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCA-TGAGA---TCCTTCATATC 105849 || | || || || || | || || | || | || ||| | | |||||| | Sbjct 3334246 ATGTTTGGAATGTTCTGGACGGAGCC----GTTTTCAGCAATGATACGGTTCTTCATGGC 3334301 Query 105850 CTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAA 105909 | ||||| | || || | ||||| || | ||| |||||| | | || Sbjct 3334302 GTCAGACCACAAGCCCATGTCAACCAGATCCTTTAGGAGCCAAGGGTTGACGACCTGGAA 3334361 Query 105910 CTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATT 105969 ||| || || ||| ||| | | ||||| || | ||||| || |||||||| || || Sbjct 3334362 CTCGCCAGCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGCTCAAAGCACTCGTT 3334421 Query 105970 ATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACG 106029 ||||||||||| || | || ||| || ||||||||||| | | |||||||| || Sbjct 3334422 GTTACCCAAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACTGTTGCG 3334481 Query 106030 AAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTT--GGTT 106087 || || | ||||||| | ||||| || ||||||| | || | || | Sbjct 3334482 AATGCCATGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCAAA-GATCGGAAGGCT 3334540 Query 106088 TCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTC 106147 |||| |||| |||| ||||| || || | ||||| || ||||| || || |||| Sbjct 3334541 TCACATTCC-ACATGTCAAACTGCAGAATGCCTTGAGATACAGGAGAGCCTTCGTATGTG 3334599 Query 106148 TCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATG 106207 || | ||||| | | || | || | || || | || || || || Sbjct 3334600 GAGTATGGGCCTTGCTCCTTGGCAAGCTCCATGGAAGCAGTGAGAGCGGCATGGTAAATT 3334659 Query 106208 GTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCAC 106267 || ||||| || | |||| ||| || ||| || || || | ||| Sbjct 3334660 GTCTCAAATATCTGCTTGTTCAGCTCTCGTGCCTCAGGAGACTCGAAAGGCAGGCGAAGG 3334719 Query 106268 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 106327 | || |||| || ||||| ||||| || | |||||| || ||||| ||||| || Sbjct 3334720 GCTAGGAACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCCTGTGGCGCATGTTG 3334779 Query 106328 GACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTG 106387 || | || | |||||| || | || ||| |||| || || | ||| | Sbjct 3334780 CTGTTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGA-TCTTATTCAAGTTTCG 3334838 Query 106388 GT-AACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 106446 ||||| | || | || || || |||| | ||| | || ||||||| Sbjct 3334839 AACAACAACTTCGGTAACATCGTGCAGCTTTTGGAAGTCATAGCAGC------CTTCATT 3334892 Query 106447 G------ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTT 106500 | ||| | || | ||| | || ||||| ||||| || || |||||| Sbjct 3334893 GTAGTCCACAAAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTCATCGGG 3334952 Query 106501 ATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTT 106560 | |||||| | || || || || | ||||| || || || || | |||||| Sbjct 3334953 GGCGCAGTACTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAGATTCTT 3335012 Query 106561 TTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGT 106620 ||||| ||||| ||||| ||||| |||||||||||| | || | || || || || Sbjct 3335013 CTGGTTGCTCTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGTTTCAGT 3335072 Query 106621 CTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTG-GCCCGT 106678 ||| | || || || || | ||| | | || | | || | |||| ||| | || | Sbjct 3335073 CTGGGCCTCTAGGATGGCATACCAAAGCTTCTGTGCCTTG----ATGGTCTTGCGACCCT 3335128 Query 106679 CCCTCCGC--CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGA 106736 | || ||| |||||| |||||| || || ||||| ||||| ||| | | Sbjct 3335129 TGTTGAGCTTCTCATACTTTTCGTAGAGAGCCTCGAACTCGTCACCGTAGCAGTCAGCCA 3335188 Query 106737 GACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCA 106796 | || || | || ||||| | |||| ||| | || || ||||| ||||||| Sbjct 3335189 GGCCGGGACATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTCAACACGCTTCA 3335248 Query 106797 TGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCAC 106856 |||| || || ||||||||||||| |||||||| | ||| | ||||| | | Sbjct 3335249 TGAAGAGATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGC 3335308 Query 106857 CTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGA 106916 | ||||| ||| | || | |||||| | | ||||| ||||| |||||||| |||| Sbjct 3335309 CATGGTTCTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGA 3335368 Query 106917 CTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGT 106970 ||||| || || | | ||| ||| |||||| ||||| || || ||| | Sbjct 3335369 TTGCGAAAGCGCC---TGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTAT 3335425 Query 106971 TAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAG 107030 | || || || ||||| ||||| | ||| | || ||||| || ||| || | Sbjct 3335426 TGAAGACTCGCAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGTATG 3335485 Query 107031 ATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTT 107090 | |||| | | | ||||||| | |||||||| |||||| ||| ||||| Sbjct 3335486 AACCGGTGGCACGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCTTGGAGATCA 3335545 Query 107091 GCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAA 107150 ||||| | | || || | || || || | || ||| ||||| || ||| | Sbjct 3335546 TTGCACAGGTCTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCATGTCGACTA 3335605 Query 107151 GGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGT 107210 ||||||| |||| || | || || || ||||||||||||||||| | || | Sbjct 3335606 GGAAGCATGAAGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCAT 3335665 Query 107211 GAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAA---TGTC 107265 | ||| | | |||| ||||||| || ||| || || | ||| |||| |||| Sbjct 3335666 GTGTGA--AAAACTTGCTGGACATCAAGTTGTAGGTTTCAATGACTCGCTCAACATTGTC 3335723 Query 107266 TTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGAT 107325 | ||| ||| |||| || |||||||| | ||||| |||||| || | || | Sbjct 3335724 TCCCC---AGATACCGACAGCAACACGCATGATCATGTGCTGGGGTCGCTCAACGATCTT 3335780 Query 107326 GCCATCGAG 107334 |||||| || Sbjct 3335781 GCCATCAAG 3335789 >seq3 Length=2371949 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 ||||||||||| ||||| || || || || || ||||| || ||||||||||| || Sbjct 2245345 TGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAGACCTGGCATGAGGCCA 2245404 Query 117346 CGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||||||| | || | ||| || | ||| |||||||||||| || || Sbjct 2245405 CGCTTCTTCAACCAGAAGATGGAAGCA-AAGGCACCGCTGAAGAAGATACCTTCGACGGC 2245463 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC---AAACCATTTCAT 117461 || || |||| ||| || | ||||||| |||||| |||| || |||| || Sbjct 2245464 AGCGAAGGCAACAAGACGTTGAGCGAAGG---TAGACTTCTTGTCGGTAATCCATCGAAT 2245520 Query 117462 TGCCCATTTCGCCTTCTT 117479 ||||| | |||||||| Sbjct 2245521 GGCCCAGTCAGCCTTCTT 2245538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980534508640