Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq35 152 1e-31 seq33 147 5e-30 seq2 107 4e-18 >seq35 Length=2560152 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | ||| ||||| || ||||| |||||||| | || |||| || || ||| Sbjct 153125 ACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGATAGGGTTCGGCCGTCCTCG 153184 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | ||| ||||||||||| || ||||| || |||||||| Sbjct 153185 AGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 153244 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| ||| ||||| || ||||| | ||||| Sbjct 153245 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTC 153304 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | ||||| Sbjct 153305 CCCGTAAGGGTTTTGACGAAGATCTGCAT 153333 >seq33 Length=3634720 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| | ||| | ||||||||| || || || || || ||||| |||| || |||| Sbjct 1474484 GAGTCGGAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCG 1474543 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| ||||||||||| || |||||||| | ||| || |||||||| || || || || Sbjct 1474544 GCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATTCCCTC 1474603 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| || || || ||||||||| || ||||| |||||| || || |||||||| Sbjct 1474604 CTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCAAGGGT 1474663 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | || |||||||| | ||||| Sbjct 1474664 GATGGTCTTGCCGGTGAGGGTCTTTACGAAGATCTGCAT 1474702 Score = 140 bits (154), Expect = 7e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| |||||||| || || || ||||| |||| || |||| ||||| ||| Sbjct 1474722 ACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCG 1474781 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || |||||||| ||||| || || ||||| || Sbjct 1474782 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 1474841 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || || || |||||| ||||| |||||||| | |||||| Sbjct 1474842 ATCTTCGACTTGACGTTGTCGATAGTATCCGAAGACTCCACCTCAAGGGTGATGGTCTTT 1474901 Query 195112 CCTGT 195116 || || Sbjct 1474902 CCAGT 1474906 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| ||| || || | || ||||| ||||| Sbjct 1474043 GTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCCAGCTG 1474102 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| ||||||||||| ||||| |||||||| || || || || || || ||||| || Sbjct 1474103 CTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATCCTGAATCTT 1474162 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||| || || ||||| || || ||||| | |||| |||||||| || Sbjct 1474163 GGACTTTACGTTGTCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGTCTTTCCGGT 1474222 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 1474223 GAGGGTCTTGACGAAGATCTGCAT 1474246 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || ||||| || ||||| ||||| || | || |||| || || || Sbjct 1474266 ACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTTCGACCGTCCTCC 1474325 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || |||||||| ||||| || |||||||| || ||||| || ||||||||| Sbjct 1474326 AACTGCTTGCCCGCGAAGATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGA 1474385 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || ||||| || || || || || || || | |||||| Sbjct 1474386 ATCTTGGACTTTACGTTATCGATGGTATCGGATGACTCAACCTCGAGAGTGATCGTCTTG 1474445 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 1474446 CCGGTGAGGGTCTTGACGAAGATCTGCAT 1474474 Score = 111 bits (122), Expect = 3e-19 Identities = 122/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || |||||||| | |||||| ||||| ||||| |||||||| |||||||| ||||| ||| Sbjct 2337654 CTACCATCTTCCAACTGCTTTCCTGCAAAGATCAGTCGTTGCTGGTCTGGTGGAATACCT 2337713 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA-ACTTTCCACTTCAAG 195098 || |||||||||||||| |||||| || || || ||||| || | ||| ||||| Sbjct 2337714 TCCTTGTCTTGAATTTTACTCTTGACATTGTCGATCGTGTCTGATGGGTGACAC-TCAAG 2337772 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGC 195138 || | ||||| || ||| ||| || || || | |||| Sbjct 2337773 AGTTATTGTCTTGCCGGTCTTAGTCTTCACAAATATTTGC 2337812 >seq2 Length=5100555 Score = 107 bits (118), Expect = 4e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| || | |||||||| ||||| || | ||| || || ||||| || Sbjct 3306736 TTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAATC 3306677 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | |||||||||||| ||||| ||||| || || ||||| ||||| ||| || || || Sbjct 3306676 AATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGTCG 3306617 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || |||||||| || || || | || | ||||| || |||| ||| || ||||| Sbjct 3306616 ATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAA 3306558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481088251612