Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq33 120 2e-22
seq35 89.7 3e-13
seq2 84.2 1e-11
>seq33
Length=3634720
Score = 120 bits (132), Expect = 2e-22
Identities = 157/215 (73%), Gaps = 8/215 (4%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||||| || ||| ||||| ||||| ||||| || ||| |||| |||| ||
Sbjct 1474493 AACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTC 1474552
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| || ||||| || || | ||| ||||||||| | || | |||||||||||
Sbjct 1474553 GAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 1474612
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGG 34947
|||||| ||||| | | ||||| | ||| | ||| || || | ||| ||||
Sbjct 1474613 GATCTTCGACTTGAC----GTTGTCGATGGTATCCGAAGACTCGACCTCAAGGGTGATGG 1474668
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
| || || ||||| ||||| || ||||||||||||
Sbjct 1474669 TCTTGCCGGTGAGGGTCTTTACGAAGATCTGCATA 1474703
Score = 107 bits (118), Expect = 1e-18
Identities = 142/197 (72%), Gaps = 10/197 (5%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| |||||||| || |||| | || |||| ||| || || || ||
Sbjct 1474284 TCCTTCTGAATGTTGTAGTCCGAGAGCGTTCGACCGTCCTCCAACTGCTTGCCCGCGAAG 1474343
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACG--- 34907
|| ||||| ||||||||| | || | ||||||||||| |||||| || |||
Sbjct 1474344 ATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTGGACTTTACGTTA 1474403
Query 34908 --GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965
|||| ||||| | | |||||| |||| || || || || || ||||| ||||
Sbjct 1474404 TCGATGGTATCGGAT-----GACTCAACCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCT 1474458
Query 34966 TCACAAAGATCTGCATA 34982
| || ||||||||||||
Sbjct 1474459 TGACGAAGATCTGCATA 1474475
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| ||| | || | || |||||||| || || || ||
Sbjct 1474056 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAG 1474115
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || |||||||||||| | || | |||||||| || |||||| || |||
Sbjct 1474116 ATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATCCTGAATCTTGGACTTTACGTTG 1474175
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | ||| | ||| || || | || ||||| ||||| ||||| ||||| ||
Sbjct 1474176 TCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGTCTTTCCGGTGAGGGTCTTGACG 1474235
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 1474236 AAGATCTGCAT 1474246
Score = 86.0 bits (94), Expect = 4e-12
Identities = 124/173 (72%), Gaps = 8/173 (5%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| || ||| |||| |||| || ||||| || || |||||
Sbjct 1474740 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 1474799
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||||||| | || | ||||||||||| |||||| |||||
Sbjct 1474800 ATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGAC---- 1474855
Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGA 34959
| | ||||| | ||| | ||| || || | ||| ||||| ||||| ||||
Sbjct 1474856 GTTGTCGATAGTATCCGAAGACTCCACCTCAAGGGTGATGGTCTTTCCAGTGA 1474908
>seq35
Length=2560152
Score = 89.7 bits (98), Expect = 3e-13
Identities = 138/195 (71%), Gaps = 8/195 (4%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| || || || ||| |||| | || || ||||| || ||||| ||
Sbjct 153143 TCCTTCTGAATGTTGTAATCAGATAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 153202
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | ||| || |||||| |||| | ||||||||||| ||||| ||||| ||
Sbjct 153203 ATCAATCGCTGTTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTGGACTTGAC--AT 153260
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| || | ||| || |||| ||| || || || ||||| || || ||
Sbjct 153261 --TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGTAAGGGTTTT 153318
Query 34967 CACAAAGATCTGCAT 34981
|| |||||||||||
Sbjct 153319 GACGAAGATCTGCAT 153333
>seq2
Length=5100555
Score = 84.2 bits (92), Expect = 1e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
||||| ||||| ||||| ||||| |||| |||| |||| |||||||||||| || ||
Sbjct 3306736 TTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAATC 3306677
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
| |||||| ||||| | || | |||||||| || || || || || |
Sbjct 3306676 AATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGTCG 3306617
Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972
|||| || || ||| || || | || ||||| || ||||| ||||||||||| ||
Sbjct 3306616 ATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAA 3306558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633457567008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |