Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq12 98.7 8e-15 seq2 87.8 1e-11 >seq12 Length=4789767 Score = 98.7 bits (108), Expect = 8e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| || || || || || || || || || ||||| || || || ||| Sbjct 2513835 GCCGTTATCACTGTCCCCGCCTACTTCAACGATTCTCAGCGACAAGCCACCAAGGACGCT 2513776 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | || || || || || ||||| || || |||||||| ||||||||||| || || Sbjct 2513775 GGTCTCATCGCAGGCCTCAACGTTCTCCGAATCATCAATGAGCCTACTGCTGCCGCCATT 2513716 Query 550520 GCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 || || || ||||| || | | ||| || | ||||| |||||||||||| Sbjct 2513715 GCTTACGGTCTTGACAAGAAGATTGAGGGCGAGCGAAATGTTCTCATCTTTGAT 2513662 >seq2 Length=5100555 Score = 87.8 bits (96), Expect = 1e-11 Identities = 106/143 (74%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 550390 AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTAC 550449 ||| | | |||| || | || || ||||| ||||| ||||| || |||||||||||||| Sbjct 1143711 AGTCAAGAATGCCGTCGTCACAGTGCCAGCCTATTTCAATGATTCCCAACGTCAAGCTAC 1143770 Query 550450 TAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509 || || ||||| | ||| | ||| | || ||||| || | |||| || || ||||| Sbjct 1143771 CAAGGACGCTGGCCAAATTTCCGGATTGAACGTTCTCCGAGTCGTCAACGAGCCCACTGC 1143830 Query 550510 TGCTGCACTTGCATATGGACTTG 550532 ||| || ||||| || || |||| Sbjct 1143831 TGCCGCCCTTGCCTACGG-CTTG 1143852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294096157640