Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq12 98.7 8e-15
seq2 87.8 1e-11
>seq12
Length=4789767
Score = 98.7 bits (108), Expect = 8e-15
Identities = 126/174 (72%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
|| || || ||||| || || || || || || || || || ||||| || || || |||
Sbjct 2513835 GCCGTTATCACTGTCCCCGCCTACTTCAACGATTCTCAGCGACAAGCCACCAAGGACGCT 2513776
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519
|| | || || || || || ||||| || || |||||||| ||||||||||| || ||
Sbjct 2513775 GGTCTCATCGCAGGCCTCAACGTTCTCCGAATCATCAATGAGCCTACTGCTGCCGCCATT 2513716
Query 550520 GCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573
|| || || ||||| || | | ||| || | ||||| ||||||||||||
Sbjct 2513715 GCTTACGGTCTTGACAAGAAGATTGAGGGCGAGCGAAATGTTCTCATCTTTGAT 2513662
>seq2
Length=5100555
Score = 87.8 bits (96), Expect = 1e-11
Identities = 106/143 (74%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 550390 AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTAC 550449
||| | | |||| || | || || ||||| ||||| ||||| || ||||||||||||||
Sbjct 1143711 AGTCAAGAATGCCGTCGTCACAGTGCCAGCCTATTTCAATGATTCCCAACGTCAAGCTAC 1143770
Query 550450 TAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509
|| || ||||| | ||| | ||| | || ||||| || | |||| || || |||||
Sbjct 1143771 CAAGGACGCTGGCCAAATTTCCGGATTGAACGTTCTCCGAGTCGTCAACGAGCCCACTGC 1143830
Query 550510 TGCTGCACTTGCATATGGACTTG 550532
||| || ||||| || || ||||
Sbjct 1143831 TGCCGCCCTTGCCTACGG-CTTG 1143852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029294096157640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |