Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq12 309 6e-79 >seq12 Length=4789767 Score = 309 bits (342), Expect = 6e-79 Identities = 1055/1619 (65%), Gaps = 59/1619 (4%) Strand=Plus/Plus Query 212687 CAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTC 212746 || ||| | ||||| ||||||| ||| || ||||| | | | ||| || ||||| | Sbjct 3334125 CATATGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCGGCAGCCATCTG 3334184 Query 212747 TATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGG 212806 | | | | ||| |||| ||||| || |||||| ||| |||||| || | || Sbjct 3334185 GACAACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGGGCTTTGATATCTGCGGG 3334244 Query 212807 GAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCAGCTGCAGGCGCATGTC 212863 || | || |||||||| || || || | | ||| | | | | |||| | Sbjct 3334245 GATGTTTGGAATGTTCTGGACGGAGCCGTTTTCAGCAATGATACGGTTCTT---CATGGC 3334301 Query 212864 CTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAA 212923 || ||| | |||| || |||| ||| | || ||||||||| | |||||| Sbjct 3334302 GTCAGACCACAAGCCCATGTCAACCAGATCCTTTAGGAGCCAAGGGTTGACGACCTGGAA 3334361 Query 212924 GTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTT 212983 || || | || || || | ||||| | || || ||||| ||||| | || |||||| Sbjct 3334362 CTCGCCAGCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGCTCAAAGCACTCGTT 3334421 Query 212984 GTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCT 213043 ||| |||| ||||| | ||| ||||| || ||||| || || || || |||||||| | Sbjct 3334422 GTTACCCAAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACTGTTGCG 3334481 Query 213044 CACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTC 213103 | || ||| | ||| | | ||| |||||||||||| | || ||| Sbjct 3334482 AATGCCATGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCAAAGATCGGA-AGG-- 3334538 Query 213104 CTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTG 213163 |||||| ||||||||||||||||||| ||||||| || || ||| | Sbjct 3334539 ------CTTCACATTCCACATGTCAAACTGCAGAATGCCTTGAGATACAGGAGAGCCTTC 3334592 Query 213164 GTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTA 213223 ||| | |||||| ||||| ||||||||||| ||||| ||| || || || || | Sbjct 3334593 GTATGTGGAGTATGGGCCTTGCTCCTTGGCAAGCTCCATGGAAGCAGTGAGAGCGGCATG 3334652 Query 213224 GTAGATGGTTTCAAATATCTCCCTGTTGAGCT-TCTTGGCCTCTGGGGACGTGAAGGGCA 213282 ||| || || |||||||||| | |||| |||| || | ||||| || ||| ||| |||| Sbjct 3334653 GTAAATTGTCTCAAATATCTGCTTGTTCAGCTCTCGT-GCCTCAGGAGACTCGAAAGGCA 3334711 Query 213283 TCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTC 213342 | | | ||||| |||| || || ||||| || |||| || ||||| ||||| | Sbjct 3334712 GGCGAAGGGCTAGGAACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCCTGTGGC 3334771 Query 213343 TCAGGTTAGACTT-GGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTG 213401 || ||| || | || ||| | |||||| ||||| |||||||||||| || Sbjct 3334772 GCATGTTGCTGTTCTGTGC-TTCCGGAACGGGGTAGTAGTTGACGTCGATGATCTTATTC 3334830 Query 213402 AGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCC 213461 | ||| || | |||| ||| |||| | ||| || || ||| | |||| Sbjct 3334831 AAGTTTCGAACAACAACTTCGGTAACATCGTGCAG---CTTTTG---GAAGTCATAGCAG 3334884 Query 213462 CC------GTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACC 213515 || || | |||||| |||| ||| | |||| |||||| ||||| ||| Sbjct 3334885 CCTTCATTGTAGTCCACAAAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACC 3334944 Query 213516 TCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCC 213575 || | | | | |||||| |||||||| ||||| || ||| || ||||||||||| Sbjct 3334945 TCATCGGGGGCGCAGTACTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCA 3335004 Query 213576 AGGTTCTGGTGGTTTGACTTTGCG-TTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCC 213634 || |||| ||| ||| ||||| ||| || ||| |||||||||||| | ||| || Sbjct 3335005 AGATTCTTCTGG-TTGCTCTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCC 3335063 Query 213635 GGTCTCTAGCTGGGACACCAGTATCTGGC--TCCAGAGGTACCTGGCCTTGACCACCCGC 213692 ||| || ||||| | | || | |||| ||| || | | ||||||| | Sbjct 3335064 GGTTTCAGTCTGGGCCTCTAGGA--TGGCATACCAAAGCTTCTGTGCCTTGA----TGGT 3335117 Query 213693 CTGACAGCTCCGGGCGTAGC--CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCC 213750 || | | || | ||| ||| |||| ||||||||| | | ||| |||| || Sbjct 3335118 CTTGC-GACCCTTGTTGAGCTTCTCATACTTTTCGTAGAGAGCCTCGAACTCGTCACCGT 3335176 Query 213751 AG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCT 213809 || | | | |||| || ||||| ||||||||| || |||| || |||| | | Sbjct 3335177 AGCAGTCAG-CCAGGCCGGGACATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTT 3335235 Query 213810 CTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTC-CCTGGTCCT 213868 || | || |||||| || || || | |||||| ||| ||| || || | || | Sbjct 3335236 TCAACACGCTTCATGAAGAGATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGA 3335295 Query 213869 CCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCA 213928 || || ||| ||| ||| || || || || | || || || | |||||| ||||| Sbjct 3335296 ACT-TCTTCCTTGCCATGGTTCTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCA 3335354 Query 213929 CGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCT 213985 ||||| | |||||| || || ||||| | || | ||||| || || ||||| | Sbjct 3335355 AGGCTCAAGGTAGATTGCGAAAGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACG 3335414 Query 213986 GGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCC 214045 || | ||||||| ||||| | ||| | | |||||||| || ||||| || Sbjct 3335415 AGCAGTGTTATTGAAGACTCGCAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCC 3335474 Query 214046 CGCTATATACGAGCCGGAGGCCC---TCAGGTTGCTCATGGAGAGCCCTATGCCACCGGC 214102 ||| || || || |||| ||| | | ||| | ||| ||| || || ||||| || Sbjct 3335475 CGCGATGTATGAACCGGTGGCACGGATACGGTGG---ATGTTGAGGCCAATACCACCAGC 3335531 Query 214103 GTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATC 214162 |||||||||||| || ||| | | | || || ||||| | ||||||||||| Sbjct 3335532 CATCTTGGAGATCATTGCACAGGTCTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATC 3335591 Query 214163 TGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTG-GACGAGCCAGAGTTGAAAA 214221 | | || | | |||||| || || | | ||||| | | ||| | ||||| | Sbjct 3335592 CTTCATGTCGACTAGGAAGCATGAAGACAG-TTGAGCCTGAGGGGTGCCCGCATTGAAGA 3335650 Query 214222 GCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACT 214280 | || || |||||| | | ||||||| | || | | ||||||| || | |||| Sbjct 3335651 GGGTTGGCGAGGCATGTGTGAAAAACTTGCTGGACATCAAGTTGTAGGTTTCAATGACT 3335709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532380810240