Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq12 214 3e-50 seq3 114 2e-20 >seq12 Length=4789767 Score = 214 bits (236), Expect = 3e-50 Identities = 718/1099 (65%), Gaps = 39/1099 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || || || || ||||| || |||||||| ||| |||||| || |||| | ||||| || Sbjct 3334639 GTGAGAGCGGCATGGTAAATTGTCTCAAATATCTGCTTGTTCAG-CTCTCGTGCCTCAGG 3334697 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||| |||| || || | || | || || || ||||| || |||| ||| Sbjct 3334698 AGACTCGAAAGGCAGGCGAAGGGCTAGGAACGCATCTGCAAGACCCTGAACGCCGACACC 3334757 Query 221536 GATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTC 221595 ||||||||||| | | ||||| ||||| || ||||| || |||||||||| Sbjct 3334758 AATGGGCCTGTGGCGCATGTTGCTGTTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTC 3334817 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 ||| | || || | ||| || | |||| || ||| |||||| ||| | Sbjct 3334818 GATGATCTTATTCAAGTTTCGAACAACAACTTCGGTAACATCGTGCAGCTTTTGGAAGT- 3334876 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAG-CGTTTAGGGCAACGCTGG 221714 || | || ||| || | | | |||||||| | || ||| || || | Sbjct 3334877 ------CA--TAGCAGCCTTCATTGTAG---TCCACAAAGGACGGCAAGGCCAGCGAAG- 3334924 Query 221715 CCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGT 221774 ||| ||| || ||||| ||||| || | | |||| |||||||| || ||||| | Sbjct 3334925 CCAAGTTGCAGACGGCGACCTCATCGGGGGCGCAGTACTCGATGATCTCCGTGCAGAGAT 3334984 Query 221775 TGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGT 221834 || || |||||| || || | || || || |||||||||| ||| || |||| Sbjct 3334985 TGGAGCTGCGGATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGATTGCAAGCATCTTTGT 3335044 Query 221835 AGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTC 221894 ||||||| || || || || || ||| ||| | || || | ||| || | || Sbjct 3335045 AGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGGCCTCTAGGATGGCATACCAAAGCT-TC 3335103 Query 221895 TG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGT---CTTTTCATACCCG--GTATAGA 221948 || || | | ||| ||| ||||| | | ||| |||||| ||| ||| Sbjct 3335104 TGTGCCTTGATGGTC---TTGCG---ACCCTTGTTGAGCTTCTCATACTTTTCGTAGAGA 3335157 Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008 || | | |||| |||||||| || ||||||| ||||| | ||||||||||| Sbjct 3335158 GCCT--CGAACTCGTCACCGTAGCAGTCAGCCAGGCCGGGACATTCGTTGGGACACATCA 3335215 Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 || |||| | ||| | || || | || ||||||||| || || |||||||| || Sbjct 3335216 GAGTCCAATCGCCGTTCTTTTCAACACGCTTCATGAAGAGATCAGGAATCCACAGGGCGA 3335275 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 | |||||||| | | || || ||| ||| | ||| || | || |||| |||| Sbjct 3335276 GGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCATGGTTCTTTCGGAGGTCCATGAACT 3335335 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 | || | ||| || ||||| ||||| || |||| || | |||||| || |||||||||| Sbjct 3335336 CGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAAAGCGCCTGGGCGCTTGTTGC 3335395 Query 222189 CACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 |||| ||||||| ||| ||| | ||||||| || || | || | | ||| Sbjct 3335396 CACCTTGATCCA-CATAACGAGCAGTGTTATTGAAGACTCGCAGCATGGGAATGACACCG 3335454 Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGGCAG 222305 ||||| || ||||||||| ||||| | |||| ||| | || ||| ||| | Sbjct 3335455 TTGGAAGTGCCATTGGTGCCCGCGATGTATGAACCGGTGGCAC---GGATACGGTGGATG 3335511 Query 222306 -ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364 | ||| |||||||| || || |||||||| || ||| ||||||| ||||| Sbjct 3335512 TTGAGGCCAATACCACCAGCCATCTTGGAGATCATTGCACAGGTCTTGAGGGTGTCGTAA 3335571 Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTG 222424 |||||||| || ||| ||||| | || | || || || || |||| |||| | Sbjct 3335572 ATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGCATGAAGACAGTTGAGCCTGA 3335631 Query 222425 GTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGA 222484 | || | || || || || || || ||| ||||| || | || ||||||| Sbjct 3335632 GGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTGTGAAAAACTTGCTGGACATCAAG 3335691 Query 222485 TCGTACGTCTCTACGACTC 222503 | ||| || || | ||||| Sbjct 3335692 TTGTAGGTTTCAATGACTC 3335710 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || || | ||||| | || || ||| |||| Sbjct 3334347 GTTGACGACCTGGAACTCGCCAGCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGG 3334406 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 || | || ||||||||| |||| |||||| | || |||||||| ||||| ||||| || Sbjct 3334407 CTCAAAGCACTCGTTGTTACCCAAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTAC 3334466 Query 221236 CAGCAGACTGTTGCG 221250 |||||||||||||| Sbjct 3334467 TAGCAGACTGTTGCG 3334481 >seq3 Length=2371949 Score = 114 bits (126), Expect = 2e-20 Identities = 169/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| || || ||||||||| || |||||||||||| Sbjct 2245942 ATTTGGCAAATGTACAAGAAGGCCGAAGCGTCCTTCTGGACCGCTGAGGAGATTGATCTG 2245883 Query 25537 GCCAAGGACATGGACGGCTGGTACG-CTCTATCCA--AAGACGAGCAGCATTT--TCTCA 25591 ||||||| | ||| ||| || | ||| | | |||||| | | || ||||| Sbjct 2245882 TCCAAGGATCTTCACGATTGGAACAACAAGATCAACGACGACGAGAAATACTTCATCTCA 2245823 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 || | ||||| ||||| || || |||||||| || || ||||||||||| ||||| Sbjct 2245822 C--ACATTTTGGCCTTCTTCGCCGCGTCTGATGGCATCGTCAACGAGAATCTCGTCGAGA 2245765 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||||| ||| || || ||| | ||||| || |||||||| |||||||| Sbjct 2245764 GATTCAGCAGCGAGGTCCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGAT 2245710 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 25815 CATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGG 25874 ||||| | |||||| |||||||| ||||| | | | ||| |||| || | Sbjct 2245545 CATCAGAAAGAAGGCTGACTGGGCCATTCGATGGATTACCGACAAGAAGTCTACCTTCGC 2245486 Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGC 25934 | || || || ||||| ||||| || || || ||||| ||||||||| | ||||| | Sbjct 2245485 TCAACGTCTTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTC 2245426 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994 |||||||||| | ||| || || |||||| || || || |||||||||||||| Sbjct 2245425 CATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCAGGTCTCACATTCTCCAACGAGCTCAT 2245366 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 | | |||||||||||||| | ||||| ||||| || || Sbjct 2245365 CTCGCGAGACGAGGGTCTCCATACTGATTTCGCCTGTCTCCT 2245324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844382019840