Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq12 214 3e-50
seq3 114 2e-20
>seq12
Length=4789767
Score = 214 bits (236), Expect = 3e-50
Identities = 718/1099 (65%), Gaps = 39/1099 (4%)
Strand=Plus/Plus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475
|| || || || ||||| || |||||||| ||| |||||| || |||| | ||||| ||
Sbjct 3334639 GTGAGAGCGGCATGGTAAATTGTCTCAAATATCTGCTTGTTCAG-CTCTCGTGCCTCAGG 3334697
Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535
||| ||| |||| || || | || | || || || ||||| || |||| |||
Sbjct 3334698 AGACTCGAAAGGCAGGCGAAGGGCTAGGAACGCATCTGCAAGACCCTGAACGCCGACACC 3334757
Query 221536 GATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTC 221595
||||||||||| | | ||||| ||||| || ||||| || ||||||||||
Sbjct 3334758 AATGGGCCTGTGGCGCATGTTGCTGTTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTC 3334817
Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655
||| | || || | ||| || | |||| || ||| |||||| ||| |
Sbjct 3334818 GATGATCTTATTCAAGTTTCGAACAACAACTTCGGTAACATCGTGCAGCTTTTGGAAGT- 3334876
Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAG-CGTTTAGGGCAACGCTGG 221714
|| | || ||| || | | | |||||||| | || ||| || || |
Sbjct 3334877 ------CA--TAGCAGCCTTCATTGTAG---TCCACAAAGGACGGCAAGGCCAGCGAAG- 3334924
Query 221715 CCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGT 221774
||| ||| || ||||| ||||| || | | |||| |||||||| || ||||| |
Sbjct 3334925 CCAAGTTGCAGACGGCGACCTCATCGGGGGCGCAGTACTCGATGATCTCCGTGCAGAGAT 3334984
Query 221775 TGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGT 221834
|| || |||||| || || | || || || |||||||||| ||| || ||||
Sbjct 3334985 TGGAGCTGCGGATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGATTGCAAGCATCTTTGT 3335044
Query 221835 AGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTC 221894
||||||| || || || || || ||| ||| | || || | ||| || | ||
Sbjct 3335045 AGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGGCCTCTAGGATGGCATACCAAAGCT-TC 3335103
Query 221895 TG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGT---CTTTTCATACCCG--GTATAGA 221948
|| || | | ||| ||| ||||| | | ||| |||||| ||| |||
Sbjct 3335104 TGTGCCTTGATGGTC---TTGCG---ACCCTTGTTGAGCTTCTCATACTTTTCGTAGAGA 3335157
Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008
|| | | |||| |||||||| || ||||||| ||||| | |||||||||||
Sbjct 3335158 GCCT--CGAACTCGTCACCGTAGCAGTCAGCCAGGCCGGGACATTCGTTGGGACACATCA 3335215
Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068
|| |||| | ||| | || || | || ||||||||| || || |||||||| ||
Sbjct 3335216 GAGTCCAATCGCCGTTCTTTTCAACACGCTTCATGAAGAGATCAGGAATCCACAGGGCGA 3335275
Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128
| |||||||| | | || || ||| ||| | ||| || | || |||| ||||
Sbjct 3335276 GGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCATGGTTCTTTCGGAGGTCCATGAACT 3335335
Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188
| || | ||| || ||||| ||||| || |||| || | |||||| || ||||||||||
Sbjct 3335336 CGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAAAGCGCCTGGGCGCTTGTTGC 3335395
Query 222189 CACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247
|||| ||||||| ||| ||| | ||||||| || || | || | | |||
Sbjct 3335396 CACCTTGATCCA-CATAACGAGCAGTGTTATTGAAGACTCGCAGCATGGGAATGACACCG 3335454
Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGGCAG 222305
||||| || ||||||||| ||||| | |||| ||| | || ||| ||| |
Sbjct 3335455 TTGGAAGTGCCATTGGTGCCCGCGATGTATGAACCGGTGGCAC---GGATACGGTGGATG 3335511
Query 222306 -ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364
| ||| |||||||| || || |||||||| || ||| ||||||| |||||
Sbjct 3335512 TTGAGGCCAATACCACCAGCCATCTTGGAGATCATTGCACAGGTCTTGAGGGTGTCGTAA 3335571
Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTG 222424
|||||||| || ||| ||||| | || | || || || || |||| |||| |
Sbjct 3335572 ATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGCATGAAGACAGTTGAGCCTGA 3335631
Query 222425 GTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGA 222484
| || | || || || || || || ||| ||||| || | || |||||||
Sbjct 3335632 GGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTGTGAAAAACTTGCTGGACATCAAG 3335691
Query 222485 TCGTACGTCTCTACGACTC 222503
| ||| || || | |||||
Sbjct 3335692 TTGTAGGTTTCAATGACTC 3335710
Score = 95.1 bits (104), Expect = 2e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || || ||||| || || | || || || | ||||| | || || ||| ||||
Sbjct 3334347 GTTGACGACCTGGAACTCGCCAGCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGG 3334406
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|| | || ||||||||| |||| |||||| | || |||||||| ||||| ||||| ||
Sbjct 3334407 CTCAAAGCACTCGTTGTTACCCAAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTAC 3334466
Query 221236 CAGCAGACTGTTGCG 221250
||||||||||||||
Sbjct 3334467 TAGCAGACTGTTGCG 3334481
>seq3
Length=2371949
Score = 114 bits (126), Expect = 2e-20
Identities = 169/235 (72%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | |||||||||||||| || || ||||||||| || ||||||||||||
Sbjct 2245942 ATTTGGCAAATGTACAAGAAGGCCGAAGCGTCCTTCTGGACCGCTGAGGAGATTGATCTG 2245883
Query 25537 GCCAAGGACATGGACGGCTGGTACG-CTCTATCCA--AAGACGAGCAGCATTT--TCTCA 25591
||||||| | ||| ||| || | ||| | | |||||| | | || |||||
Sbjct 2245882 TCCAAGGATCTTCACGATTGGAACAACAAGATCAACGACGACGAGAAATACTTCATCTCA 2245823
Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651
|| | ||||| ||||| || || |||||||| || || ||||||||||| |||||
Sbjct 2245822 C--ACATTTTGGCCTTCTTCGCCGCGTCTGATGGCATCGTCAACGAGAATCTCGTCGAGA 2245765
Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706
|||||| ||| || || ||| | ||||| || |||||||| ||||||||
Sbjct 2245764 GATTCAGCAGCGAGGTCCAGATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGAT 2245710
Score = 107 bits (118), Expect = 4e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 25815 CATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGG 25874
||||| | |||||| |||||||| ||||| | | | ||| |||| || |
Sbjct 2245545 CATCAGAAAGAAGGCTGACTGGGCCATTCGATGGATTACCGACAAGAAGTCTACCTTCGC 2245486
Query 25875 CGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGC 25934
| || || || ||||| ||||| || || || ||||| ||||||||| | ||||| |
Sbjct 2245485 TCAACGTCTTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTC 2245426
Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994
|||||||||| | ||| || || |||||| || || || ||||||||||||||
Sbjct 2245425 CATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCAGGTCTCACATTCTCCAACGAGCTCAT 2245366
Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036
| | |||||||||||||| | ||||| ||||| || ||
Sbjct 2245365 CTCGCGAGACGAGGGTCTCCATACTGATTTCGCCTGTCTCCT 2245324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844382019840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |