Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq18 150 5e-31 seq12 129 2e-24 >seq18 Length=3787933 Score = 150 bits (166), Expect = 5e-31 Identities = 197/273 (72%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630 |||||||| | ||||| | ||| ||||| || ||||||||| | |||||| || || Sbjct 1857601 GTCTTCCAGAGCCTTGACGAGACGGCGCTGGATGTAACCAGTTTCGGCTGTTTTCACGGC 1857660 Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAG 302690 || || || ||||| | | ||| |||| || |||||||| | ||| |||| || Sbjct 1857661 CGTGTCGATGAGACCTTCTCTTCCAGCCATGGCGTGGAAGAAGAACTCGCTCGGTGTCAG 1857720 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | | | | || | |||||||||||||| ||||||||||||| ||| |||||| Sbjct 1857721 GCCTCGTAGATAAGAATTTTCAACGAAACCACGAGCCTCGGGCGAATAGTCATCCTTGGT 1857780 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 ||||| |||||||| | | || | ||| | ||||||||||| || || ||| |||| Sbjct 1857781 GAAGTGAGGCAGGGTGCGATACTTGAATCCGAAAGGGATACGCTTGCCCTCCACGATCTG 1857840 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||| || | | | | ||||||| ||||| || Sbjct 1857841 CTGACCGACGAGAGCAGTCATCTGGGAAATGTT 1857873 >seq12 Length=4789767 Score = 129 bits (142), Expect = 2e-24 Identities = 297/442 (67%), Gaps = 4/442 (1%) Strand=Plus/Plus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 |||||||| ||||| ||||| |||||||| ||||||||||| | ||||| ||||| | | Sbjct 3335392 TTGCCACCTTGATCCACATAACGAGCAGTGTTATTGAAGACTCGCAGCATGGGAATGACA 3335451 Query 156120 CCATTGGAAGTGCCATTGGT-TCCGCGAATATGCGAACCAGATGAGCGAACATTATGAAT 156178 || ||||||||||||||||| ||||| || | ||||| | | || | | || || Sbjct 3335452 CCGTTGGAAGTGCCATTGGTGCCCGCG-ATGTATGAACCGGTGGCACGGATACGGTGGAT 3335510 Query 156179 ATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGTATTGA 156237 | || ||||||||||| | |||| || || || || || ||| | || | | Sbjct 3335511 GTTGAGGCCAATACCACCAG-CCATCTTGGAGATCATTGCACAGGTCTTGAGGGTGTCGT 3335569 Query 156238 AAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTC 156297 |||| || ||||| ||||| | ||| | ||| |||| ||| | ||||| Sbjct 3335570 AAATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGCATGAAGACAGTTGAGCCT 3335629 Query 156298 GTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATAT 156357 | || || || || ||||| || || || | ||||| | ||| |||| | ||||| Sbjct 3335630 GAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTGTGAAAAACTTGCTGGACATCA 3335689 Query 156358 AATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCA 156417 | | ||| || || | | ||||| ||| || |||| || || || | || Sbjct 3335690 AGTTGTAGGTTTCAATGACTCGCTCAACATTGTCTCCCCAGATACCGACAGCAACACGCA 3335749 Query 156418 TCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTT 156477 | ||| ||||| || ||||| || ||| ||||||| | || ||||| | | | Sbjct 3335750 TGATCATGTGCTGGGGTCGCTCAACGATCTTGCCATCAAGTTTAAGGAGGTAGGATCTCT 3335809 Query 156478 CCAGAGTTTTAAACCCGAAATA 156499 | | |||||| || |||||||| Sbjct 3335810 CTAAAGTTTTGAAACCGAAATA 3335831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816921124132