Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq12 123 3e-22 seq3 122 1e-21 >seq12 Length=4789767 Score = 123 bits (136), Expect = 3e-22 Identities = 263/391 (67%), Gaps = 15/391 (4%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || || || || || || |||| || ||||| || |||||||| | || |||||||| Sbjct 3335401 TGATCCACATAACGAGCAGTGTTATTGAAGACTCGCAGCATGGGAATGACACCGTTGGAA 3335460 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||| ||||||||||| | ||| | |||| ||| || | ||| | | ||| Sbjct 3335461 GTGCCATTGGTGCCCGCGATGTATGAACCGGTGGCACGGATACGGTGGATGTTGAGGCCA 3335520 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || || ||| ||||||||| | || || ||||| |||||||| |||||||| Sbjct 3335521 ATACCACCAGCCATCTTGGAGATCATTGCACAGGTCTTGAGGGTGTCGTAAATGCCCTCA 3335580 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||| |||||||||| || || ||||| || || ||| | || | ||||| Sbjct 3335581 ATGCTGTCATCCTTCATGTCGACTAGGAAGCATGAAGACAGTTGAGCCTGAGGGGTGCCC 3335640 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365 || |||||||| || |||| || ||||| |||| | ||||| || |||||| Sbjct 3335641 GCATTGAAGAGGGTTGGCGAGGCATGTGTGAAAAACTTGCTGGACATCAAGTTGTAGGTT 3335700 Query 1630366 GCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGACG 1630425 | | || ||| | | ||| ||| || ||| || |||| || || Sbjct 3335701 TCAATGACTCGCTCAA---CATTGTC----TC------CCC--AGATACCGACAGCAACA 3335745 Query 1630426 CGCATGAGCATGTACTGGGGCCGCTCGACGA 1630456 ||||||| ||||| |||||| ||||| |||| Sbjct 3335746 CGCATGATCATGTGCTGGGGTCGCTCAACGA 3335776 >seq3 Length=2371949 Score = 122 bits (134), Expect = 1e-21 Identities = 90/105 (86%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| || |||||||| || || ||| |||| |||||| | || |||||||||| Sbjct 2003285 CCAACTACCTTGATATCAAGCCCCTTCTTGATGTTGGATGCAAGACAGTTGCCAACATGA 2003226 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 |||||||||||||||| |||||||| ||||| || || ||||||| Sbjct 2003225 TCAAGGGCAAGTCGCCAGAGGAGATTCGCAAAACATTCAACATCA 2003181 Score = 104 bits (114), Expect = 3e-16 Identities = 171/242 (71%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| |||||| |||||||||||||| | || ||||| Sbjct 2245036 GCCTTCTGGTAATCGGCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAGATG 2245095 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||||| | ||| || ||| ||| || |||||| Sbjct 2245096 TTCTCCATGAAGTCGAAGGGGTTGGACACCTTATATACCTTCTCGTTGCCAAGAGCGA-- 2245153 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 | || || || ||||| || |||||||| ||||| ||| ||| ||||||||||| | Sbjct 2245154 CCAGGAGTCGATCGGCAACGAACTCGATATACTGCTTCATCAGGGTCGCGTTCATGCC-A 2245212 Query 868869 TGAGCGCCAC-CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACG 868927 || |||| ||||| | |||| ||| ||||||| ||| || | ||| || || ||| Sbjct 2245213 AGAAGACCACATGGCAGAGCCTCGGTCAGGAACTCTTGCTCAATTTTGACAGCGTCAACG 2245272 Query 868928 AT 868929 || Sbjct 2245273 AT 2245274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107136245671412