Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq12 123 3e-22
seq3 122 1e-21
>seq12
Length=4789767
Score = 123 bits (136), Expect = 3e-22
Identities = 263/391 (67%), Gaps = 15/391 (4%)
Strand=Plus/Plus
Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125
|| || || || || || |||| || ||||| || |||||||| | || ||||||||
Sbjct 3335401 TGATCCACATAACGAGCAGTGTTATTGAAGACTCGCAGCATGGGAATGACACCGTTGGAA 3335460
Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185
||| ||||||||||| | ||| | |||| ||| || | ||| | | |||
Sbjct 3335461 GTGCCATTGGTGCCCGCGATGTATGAACCGGTGGCACGGATACGGTGGATGTTGAGGCCA 3335520
Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245
|| || || ||| ||||||||| | || || ||||| |||||||| ||||||||
Sbjct 3335521 ATACCACCAGCCATCTTGGAGATCATTGCACAGGTCTTGAGGGTGTCGTAAATGCCCTCA 3335580
Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305
|| ||| |||||||||| || || ||||| || || ||| | || | |||||
Sbjct 3335581 ATGCTGTCATCCTTCATGTCGACTAGGAAGCATGAAGACAGTTGAGCCTGAGGGGTGCCC 3335640
Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGTG 1630365
|| |||||||| || |||| || ||||| |||| | ||||| || ||||||
Sbjct 3335641 GCATTGAAGAGGGTTGGCGAGGCATGTGTGAAAAACTTGCTGGACATCAAGTTGTAGGTT 3335700
Query 1630366 GCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGACG 1630425
| | || ||| | | ||| ||| || ||| || |||| || ||
Sbjct 3335701 TCAATGACTCGCTCAA---CATTGTC----TC------CCC--AGATACCGACAGCAACA 3335745
Query 1630426 CGCATGAGCATGTACTGGGGCCGCTCGACGA 1630456
||||||| ||||| |||||| ||||| ||||
Sbjct 3335746 CGCATGATCATGTGCTGGGGTCGCTCAACGA 3335776
>seq3
Length=2371949
Score = 122 bits (134), Expect = 1e-21
Identities = 90/105 (86%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||||||||| || |||||||| || || ||| |||| |||||| | || ||||||||||
Sbjct 2003285 CCAACTACCTTGATATCAAGCCCCTTCTTGATGTTGGATGCAAGACAGTTGCCAACATGA 2003226
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
|||||||||||||||| |||||||| ||||| || || |||||||
Sbjct 2003225 TCAAGGGCAAGTCGCCAGAGGAGATTCGCAAAACATTCAACATCA 2003181
Score = 104 bits (114), Expect = 3e-16
Identities = 171/242 (71%), Gaps = 6/242 (2%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | || ||| |||||| |||||||||||||| | || |||||
Sbjct 2245036 GCCTTCTGGTAATCGGCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAGATG 2245095
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808
|||||| | ||| ||||||| | ||| || ||| ||| || ||||||
Sbjct 2245096 TTCTCCATGAAGTCGAAGGGGTTGGACACCTTATATACCTTCTCGTTGCCAAGAGCGA-- 2245153
Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868
| || || || ||||| || |||||||| ||||| ||| ||| ||||||||||| |
Sbjct 2245154 CCAGGAGTCGATCGGCAACGAACTCGATATACTGCTTCATCAGGGTCGCGTTCATGCC-A 2245212
Query 868869 TGAGCGCCAC-CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACG 868927
|| |||| ||||| | |||| ||| ||||||| ||| || | ||| || || |||
Sbjct 2245213 AGAAGACCACATGGCAGAGCCTCGGTCAGGAACTCTTGCTCAATTTTGACAGCGTCAACG 2245272
Query 868928 AT 868929
||
Sbjct 2245273 AT 2245274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107136245671412
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |