Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq12 196 4e-45 seq35 138 1e-27 seq33 107 2e-18 >seq12 Length=4789767 Score = 196 bits (216), Expect = 4e-45 Identities = 923/1448 (64%), Gaps = 56/1448 (4%) Strand=Plus/Plus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | |||||| || || || || | |||| || ||| || ||| ||| | || Sbjct 3334347 GTTGACGACCTGGAACTCGCCAGCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGG 3334406 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 |||||| | |||||||| |||| ||||| | || | ||||| ||||| || || Sbjct 3334407 CTCAAAGCACTCGTTGTTACCCAAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTAC 3334466 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680 | ||| || || | || || ||||||| | ||||| ||||| | ||||||||| Sbjct 3334467 TAGCAGACTGTTGCGAATGCCATGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCA 3334526 Query 138681 CAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACT 138740 | |||| ||| || |||||||| || |||| | || || | | | ||| Sbjct 3334527 AAGATCGGAAGGCTTCACATTCCACATGTCAAACTGCAGAATGCCTTGAGATACAGGAGA 3334586 Query 138741 GCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGC 138800 ||||||||| | |||| || ||| | || | ||| || || ||| || Sbjct 3334587 GCCTTCGTATGTGGAGTATGGGCCTTGCTCCTTGGCAAGCTCCATGGAAGCAGTGAGAGC 3334646 Query 138801 ACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTA 138860 ||| |||||| || || ||||||| || ||| ||| ||||| | |||| | Sbjct 3334647 GGCATGGTAAATTGTCTCAAATATCTGCTTGTTCAGCTCTCGTGCCTCAGGAGACTCGAA 3334706 Query 138861 CGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCG 138920 |||| ||| || |||||| || || || || || ||||| || || | || | Sbjct 3334707 AGGCAGGCGAAGGGCTAGGAACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCCT 3334766 Query 138921 ATGGCGCAGATTTGACGCTTTTGCG-GCTTCGATA---GGATAATAGTTTACATCGATGA 138976 ||||||| || ||| || | ||||| | || || ||||| || ||||||| Sbjct 3334767 GTGGCGCATGTT----GCTGTTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGA 3334822 Query 138977 TTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATG 139036 | || || || ||||| || || || | || || | | || || || || Sbjct 3334823 TCTTATTCAAGTTTCGAACAACAACTTCGGTAACATCGTGCAGCTTTTGGAAGTCATAGC 3334882 Query 139037 TGCCCCCGTTGTCGTCGACGACGT-CGACAAATTTGTTGACACAAATCGAGGCTATGTTG 139095 ||| | |||| ||| || | | || ||| | || ||| || | |||| Sbjct 3334883 AGCCTTCATTGTAGTCCACAAAGGACGGCAAG------GCCAG----CGAAGCCAAGTTG 3334932 Query 139096 CACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACAC 139155 || || || || || |||||| ||| ||| |||| || || | || | ||| | Sbjct 3334933 CAGACGGCGACCTCATCGGGGGCGCAGTACTCGATGATCTCCGTGCAGAGATTGGAGCTG 3334992 Query 139156 TTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATA 139215 ||| || || | ||| | || ||||| || || || |||||||||||||| ||||| Sbjct 3334993 CGGATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGATTGCAAGCATCTTTGTAGAGCATG 3335052 Query 139216 TACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAA-------GTCCCT 139268 | || | || ||||| || | ||||| ||| | | ||| || ||| Sbjct 3335053 AAAGGGTTTCCGGTTTCAGTCTGGGCCTCTAGGATGGCAT--ACCAAAGCTTCTGTGCCT 3335110 Query 139269 AGCTTGTATTT-GACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGA 139327 | | || || ||| | || || | ||| |||||||||||||| | |||| Sbjct 3335111 TGATGGTCTTGCGACCCTTGTTGAGCTT------CTCATACTTTTCGTAGAGAGCCTCGA 3335164 Query 139328 A-TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCAT 139386 | ||| ||||||||| ||||| || || |||| | || |||||||| || | ||| Sbjct 3335165 ACTCG-TCACCGTAGCAGTCAGCCAGGCCGGGACATTCGTTGGGACACATCAGAGTCCAA 3335223 Query 139387 ACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAA 139446 |||||||| | || ||| ||||||| ||||| |||||||||| |||| | | | Sbjct 3335224 TCGCCGTTCTTTTCAACACGCTTCATGAAGAGATCAGGAATCCACAGGGCGAGGAAGAGA 3335283 Query 139447 T--CGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTC--ATGTTAAGGAAATCAAA 139502 | || |||| || |||||| ||||| | | |||| | || | ||| || || Sbjct 3335284 TCACGTGCGCGAACT--TCTTCC-TTGCCATGGTTC-TTTCGGAGGTCCATGAACTCGAA 3335339 Query 139503 AACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---TTTGCCACC 139559 ||||| || ||||| || || || ||||| || | |||||| || |||||||| Sbjct 3335340 CACGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAAAGCGCCTGGGCGCTTGTTGCCACC 3335399 Query 139560 TTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGC 139619 |||||| || | || ||| |||||||| || |||| ||| || | |||| | | Sbjct 3335400 TTGATCCACATAACGAGCAGTGTTATTGAAGACTCGCAGCATGGGAATGACACCGTTGGA 3335459 Query 139620 TGTTCCGTTGGTGCTACGGATG---GGACTGTTGCGAGCTCGGACGTCATGTACATTGAT 139676 || || ||||||| |||| | || | || || |||| || | |||| Sbjct 3335460 AGTGCCATTGGTGCCCGCGATGTATGAACCGGTG---GCACGGATACGGTGGATGTTGAG 3335516 Query 139677 GCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGTAATGTCTCGTATATAC 139735 ||| || || || | | ||||| || | | || || | | || ||||| || | Sbjct 3335517 GCCAATACCACCAGCCATCTTGGAGATCATTGCACAGGTCTTG-AGGGTGTCGTAAATGC 3335575 Query 139736 CTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCG 139795 | |||||||| |||| ||| ||| || |||||||| || ||||| | | | Sbjct 3335576 CCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGCATGAAGACAGTTGAGCCTGAGGGG 3335635 Query 139796 TGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGT 139855 |||| || || || || || || || ||||| | | | |||||||| | || Sbjct 3335636 TGCCCGCATTGAAGAGGGTTGGCGAGGCATGTGTGAAAAACTTGCTGGACATCAAGTTGT 3335695 Query 139856 ACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCA 139915 | ||||| ||| | | | ||| || ||| ||||||||||| || ||||| | || Sbjct 3335696 AGGTTTCAATGACTCGCTCAACATTGTCTCCCCAGATACCGACAGCAACACGCATGATCA 3335755 Query 139916 TATGTTGG 139923 | || ||| Sbjct 3335756 TGTGCTGG 3335763 >seq35 Length=2560152 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || || ||||| || ||||| || || | || Sbjct 153333 ATGCAGATCTTCGTCAAAACCCTTACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCC 153274 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || || || || ||| Sbjct 153273 GACACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAA 153214 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| ||||| || ||||| ||||| ||| | | || ||||| ||| Sbjct 153213 CAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTATCTGATTACAAC 153154 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||||| ||||| ||||| | ||| ||||| |||| | || ||||||| Sbjct 153153 ATTCAGAAGGAGTCGACTTTGCACCTGGTGCTGCGTCTACGAGGAGGCG 153105 >seq33 Length=3634720 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || | | Sbjct 1474702 ATGCAGATCTTCGTAAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 1474643 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || ||||| || || || || Sbjct 1474642 GATACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 1474583 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| ||||| || ||||| |||||| ||| | | || || || ||| Sbjct 1474582 CAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAAC 1474523 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || || |||||||| | ||| | || || || Sbjct 1474522 ATCCAGAAGGAATCTACTCTTCACTTGGTTCTCCGACTCCGTGGTGG 1474476 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || |||||| | |||||||| | | Sbjct 1474246 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATTACGTTGGAAGTAGAGTCGTCT 1474187 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | ||||| ||||| || || || || || || || || || || Sbjct 1474186 GACACAATCGACAACGTAAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAG 1474127 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| || || || |||||||| || | | | || || || ||| Sbjct 1474126 CAACGTCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAAC 1474067 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||| || | || ||||||| ||| Sbjct 1474066 ATCCAGAAGGAGTCTACGCTCCACTTAGTCCTCCGTCTGCGCGGCGGC 1474019 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || | || Sbjct 1474474 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCC 1474415 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| ||||| |||||||| || || || || || || || Sbjct 1474414 GATACCATCGATAACGTAAAGTCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAG 1474355 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || || ||| ||||||| ||| | || || || ||| Sbjct 1474354 CAGCGACTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGAACGCTCTCGGACTACAAC 1474295 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 ||||| ||||| || || || || Sbjct 1474294 ATTCAGAAGGAGTCTACCCTCCA 1474272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897397546080