Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3 113 7e-19 seq12 102 1e-15 >seq3 Length=2371949 Score = 113 bits (124), Expect = 7e-19 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||| || ||||||||||| || ||| | || |||||||| || |||||| | | Sbjct 2003285 CCAACTACCTTGATATCAAGCCCCTTCTTGATGTTGGATGCAAGACAGTTGCCAACATGA 2003226 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 |||||||||||||||| ||||| || ||||| || || ||||||| Sbjct 2003225 TCAAGGGCAAGTCGCCAGAGGAGATTCGCAAAACATTCAACATCA 2003181 Score = 93.3 bits (102), Expect = 7e-13 Identities = 172/248 (69%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||| || ||| | || ||| |||||| |||||||||||||| | || Sbjct 2245030 ACGCCAGCCTTCTGGTAATCGGCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGA 2245089 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--GA 794010 ||||| |||||| | ||| ||||||| | | || ||||||| || || Sbjct 2245090 GAGATGTTCTCCATGAAGTCGAAGGGGTTGGACACCTTATATACCTTCTCGTTGCCAAGA 2245149 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 |||| | || || || ||||| ||||| || || ||||| ||| |||| ||||||| Sbjct 2245150 GCGA--CCAGGAGTCGATCGGCAACGAACTCGATATACTGCTTCATCAGGGTCGCGTTCA 2245207 Query 794071 TGCCGATGAGCGCCAC-GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||| | || |||| ||||| | |||| | | ||||||| ||| || | ||| || Sbjct 2245208 TGCC-AAGAAGACCACATGGCAGAGCCTCGGTCAGGAACTCTTGCTCAATTTTGACAGCG 2245266 Query 794130 TCGATGAT 794137 || | ||| Sbjct 2245267 TCAACGAT 2245274 >seq12 Length=4789767 Score = 102 bits (112), Expect = 1e-15 Identities = 178/259 (69%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || || ||||| || || |||| || ||||| || |||||||| | | |||||||| Sbjct 3335401 TGATCCACATAACGAGCAGTGTTATTGAAGACTCGCAGCATGGGAATGACACCGTTGGAA 3335460 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 ||| ||||||||||| | ||| | || | ||| || | ||| | | ||| Sbjct 3335461 GTGCCATTGGTGCCCGCGATGTATGAACCGGTGGCACGGATACGGTGGATGTTGAGGCCA 3335520 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || || ||| ||||||||| | || || | || || || ||||| |||||||| Sbjct 3335521 ATACCACCAGCCATCTTGGAGATCATTGCACAGGTCTTGAGGGTGTCGTAAATGCCCTCA 3335580 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || ||| |||||||||| | || ||||| || || ||| | | | ||||| Sbjct 3335581 ATGCTGTCATCCTTCATGTCGACTAGGAAGCATGAAGACAGTTGAGCCTGAGGGGTGCCC 3335640 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 ||||||||||| || |||| Sbjct 3335641 GCATTGAAGAGGGTTGGCG 3335659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916242570515804