Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq33 140 2e-28
seq35 125 5e-24
seq2 87.8 1e-12
>seq33
Length=3634720
Score = 140 bits (154), Expect = 2e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||||| || |||||||| ||||| ||||| || ||| | || ||||
Sbjct 1474491 AGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 1474550
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| ||||||||||||| ||| ||||||||| | || | |||||||||||
Sbjct 1474551 TCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 1474610
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || | |||||| |||| ||| ||||||
Sbjct 1474611 TGGATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCAAGGGTGATGGTC 1474670
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || |||||||||||||| |||||||||||
Sbjct 1474671 TTGCCGGTGAGGGTCTTTACGAAGATCTGCAT 1474702
Score = 116 bits (128), Expect = 2e-21
Identities = 156/217 (72%), Gaps = 10/217 (5%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || || | ||| ||||||||||||||| |||||||| || | || | ||
Sbjct 1474263 AGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTTCGACCGTCC 1474322
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| || |||||||| ||||| ||||||||| | || | |||||||||||
Sbjct 1474323 TCCAACTGCTTGCCCGCGAAGATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCT 1474382
Query 34886 TTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940
| || || || ||| |||| ||||| | | ||| || || | || |
Sbjct 1474383 TGAATCTTGGACTTTACGTTATCGATGGTATCGGAT-----GACTCAACCTCGAGAGTGA 1474437
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| ||||| || ||||||||||| || |||||||||||
Sbjct 1474438 TCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1474474
Score = 114 bits (126), Expect = 8e-21
Identities = 141/193 (73%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| ||||| ||| |||| | || ||||| ||||| || |||||
Sbjct 1474055 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAA 1474114
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||| || |||||||||||| | || | |||||||| || | || || || |||
Sbjct 1474115 GATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATCCTGAATCTTGGACTTTACGTT 1474174
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
| || | ||| | ||| || || | || ||||||||||| ||||||||||| ||
Sbjct 1474175 GTCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGTCTTTCCGGTGAGGGTCTTGAC 1474234
Query 34966 AAAGATCTGCATG 34978
||||||||||||
Sbjct 1474235 GAAGATCTGCATG 1474247
Score = 109 bits (120), Expect = 4e-19
Identities = 138/190 (73%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || |||| |||| ||||||||| ||||| ||||| || ||| | || ||||
Sbjct 1474719 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 1474778
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || || |||||||| || ||||||||| | || | |||||||||||
Sbjct 1474779 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 1474838
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || | ||| || |||| ||| ||||||
Sbjct 1474839 TGGATCTTCGACTTGACGTTGTCGATAGTATCCGAAGACTCCACCTCAAGGGTGATGGTC 1474898
Query 34946 TTTCCCGTGA 34955
||||| ||||
Sbjct 1474899 TTTCCAGTGA 1474908
>seq35
Length=2560152
Score = 125 bits (138), Expect = 5e-24
Identities = 161/220 (73%), Gaps = 8/220 (4%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||||||| | || ||||||||||||||| || || |||||| | || | ||
Sbjct 153121 CAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGATAGGGTTCGGCCGTC 153180
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| ||||||||||||| ||| || |||||| |||| | |||||||||||
Sbjct 153181 CTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGGATGCCCTCCTTGTC 153240
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940
| || || ||||| || | ||||| || | ||| || || | ||| |
Sbjct 153241 TTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGA 153296
Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980
| ||||| ||||| ||||| || || ||||||||||||||
Sbjct 153297 TAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCATGAT 153336
>seq2
Length=5100555
Score = 87.8 bits (96), Expect = 1e-12
Identities = 128/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| || || | || |||| |||| || ||||||||||| |
Sbjct 3306738 CCTTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAA 3306679
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||| |||||| ||||| | || | |||||||| || | ||||| || ||
Sbjct 3306678 TCAATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGT 3306619
Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967
| |||| || || |||||| || | || |||||||| ||||| || ||||| || |
Sbjct 3306618 CGATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGA 3306559
Query 34968 A 34968
|
Sbjct 3306558 A 3306558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325692657102284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |