Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq33 140 2e-28 seq35 125 5e-24 seq2 87.8 1e-12 >seq33 Length=3634720 Score = 140 bits (154), Expect = 2e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || |||||||| ||||| ||||| || ||| | || |||| Sbjct 1474491 AGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 1474550 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||||| ||| ||||||||| | || | ||||||||||| Sbjct 1474551 TCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 1474610 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | |||||| |||| ||| |||||| Sbjct 1474611 TGGATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCAAGGGTGATGGTC 1474670 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || |||||||||||||| ||||||||||| Sbjct 1474671 TTGCCGGTGAGGGTCTTTACGAAGATCTGCAT 1474702 Score = 116 bits (128), Expect = 2e-21 Identities = 156/217 (72%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| ||||||||||||||| |||||||| || | || | || Sbjct 1474263 AGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTTCGACCGTCC 1474322 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || |||||||| ||||| ||||||||| | || | ||||||||||| Sbjct 1474323 TCCAACTGCTTGCCCGCGAAGATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCT 1474382 Query 34886 TTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 | || || || ||| |||| ||||| | | ||| || || | || | Sbjct 1474383 TGAATCTTGGACTTTACGTTATCGATGGTATCGGAT-----GACTCAACCTCGAGAGTGA 1474437 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||||| || ||||||||||| || ||||||||||| Sbjct 1474438 TCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1474474 Score = 114 bits (126), Expect = 8e-21 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| ||| |||| | || ||||| ||||| || ||||| Sbjct 1474055 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAA 1474114 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || |||||||||||| | || | |||||||| || | || || || ||| Sbjct 1474115 GATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATCCTGAATCTTGGACTTTACGTT 1474174 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| | ||| || || | || ||||||||||| ||||||||||| || Sbjct 1474175 GTCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGTCTTTCCGGTGAGGGTCTTGAC 1474234 Query 34966 AAAGATCTGCATG 34978 |||||||||||| Sbjct 1474235 GAAGATCTGCATG 1474247 Score = 109 bits (120), Expect = 4e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| |||| ||||||||| ||||| ||||| || ||| | || |||| Sbjct 1474719 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCC 1474778 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || |||||||| || ||||||||| | || | ||||||||||| Sbjct 1474779 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 1474838 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || |||| ||| |||||| Sbjct 1474839 TGGATCTTCGACTTGACGTTGTCGATAGTATCCGAAGACTCCACCTCAAGGGTGATGGTC 1474898 Query 34946 TTTCCCGTGA 34955 ||||| |||| Sbjct 1474899 TTTCCAGTGA 1474908 >seq35 Length=2560152 Score = 125 bits (138), Expect = 5e-24 Identities = 161/220 (73%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | || ||||||||||||||| || || |||||| | || | || Sbjct 153121 CAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGATAGGGTTCGGCCGTC 153180 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||||||||||| ||| || |||||| |||| | ||||||||||| Sbjct 153181 CTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGGATGCCCTCCTTGTC 153240 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| || | ||||| || | ||| || || | ||| | Sbjct 153241 TTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGA 153296 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 | ||||| ||||| ||||| || || |||||||||||||| Sbjct 153297 TAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCATGAT 153336 >seq2 Length=5100555 Score = 87.8 bits (96), Expect = 1e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || || | || |||| |||| || ||||||||||| | Sbjct 3306738 CCTTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAA 3306679 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| |||||| ||||| | || | |||||||| || | ||||| || || Sbjct 3306678 TCAATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGT 3306619 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || |||||| || | || |||||||| ||||| || ||||| || | Sbjct 3306618 CGATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGA 3306559 Query 34968 A 34968 | Sbjct 3306558 A 3306558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692657102284