Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq12 217 1e-51 seq35 122 8e-23 seq33 114 1e-20 >seq12 Length=4789767 Score = 217 bits (240), Expect = 1e-51 Identities = 997/1553 (64%), Gaps = 69/1553 (4%) Strand=Plus/Plus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || ||||| |||||||| || || || | || | || | ||| || |||| Sbjct 3334348 TTGACGACCTGGAACTCGCCAGCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGC 3334407 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 ||||| |||||||||| ||||| ||||| | || | || || ||||| ||||| Sbjct 3334408 TCAAAGCACTCGTTGTTACCCAAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACT 3334467 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 ||||| |||||| | || | || |||| |||||| | ||||||||||| Sbjct 3334468 AGCAGACTGTTGCGAATGCCATGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCAA 3334527 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCG-GCTAGCGGGGCT 148498 || || || |||| ||||||||||| ||||||||||||| | | || | || Sbjct 3334528 AGATCGGAAGGCTTCACATTCCACATGTCAAACTGCAGAATGCCTTGAGATA-CAGGAGA 3334586 Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGC 148558 ||| ||||| | | ||| || || ||| || || || || | || ||| || Sbjct 3334587 GCCTTCGTATGTGGAGTATGGGCCTTGCTCCTTGGCAAGCTCCATGGAAGCAGTGAGAGC 3334646 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGC---AGCGCCGC-CGACTCGCTTT 148614 | | | |||||| ||||| || ||| |||| ||| | ||| | || | | Sbjct 3334647 GGCATGGTAAATTGTCTCAAATATCTGCTTGTTCAGCTCTCGTGCCTCAGGAGAC----T 3334702 Query 148615 CGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGG 148674 || | |||| || || | ||||| || ||||| ||||| ||||| || ||||||| Sbjct 3334703 CGAAAGGCAGGCGAAGGGCTAGGAACGCATCTGCAAGACCCTGAACGCCGACACCAATGG 3334762 Query 148675 GCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-GGATAGTGGTTGCGGTCGATG 148733 ||| ||| |||||| | | || || || | || |||| |||| ||||||| Sbjct 3334763 GCCTGTGGCGCATGTTGCTGTTCTGTGC-TTCCGGAACGGGGTAGTAGTTGACGTCGATG 3334821 Query 148734 ATCTT-GTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTA 148792 ||||| ||||| || || || || || | |||| | ||||| || || || || Sbjct 3334822 ATCTTATTCAAG-TTTCGAACAACAACTTCGGTAACATCGTGCAGCTTTTGGAAGTCATA 3334880 Query 148793 ---------CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACAC 148843 |||| || || | | | ||| || ||| | || || | ||||| || Sbjct 3334881 GCAGCCTTCATTGTAGTCCACAAAGGA-CGG--CAAGGCCAGCGAAGCCAAGTTGCAGAC 3334937 Query 148844 GGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGAT 148903 ||| |||||| ||||||| |||||| | |||||| | ||| |||||| || ||| Sbjct 3334938 GGCGACCTCATCGGGGGCGCAGTACTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGAT 3334997 Query 148904 CACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||| | ||||| || |||||||||| ||||| || || ||||| |||||| | || Sbjct 3334998 GGTGCCAAGATTCTTCTGGTTGCTCTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGG 3335057 Query 148964 TCCGCCAGTTTCCACCTGCGTTTCCACTATG---AACCGATGCAGGTCCTGCGCGCGCAC 149020 || ||||| ||| | || | ||| ||| | || | ||| || | Sbjct 3335058 GTTTCCGGTTTCAGTCTGGGCCTCTAGGATGGCATACCAA---AGCTTCTGTGC-----C 3335109 Query 149021 TTGCTGCTCGTAGCGACCCT------CCTGCTCGTA--TAAAGTATACAGCCGCTCGAAC 149072 ||| || || | |||||||| || ||| || | ||| | ||| ||||||| Sbjct 3335110 TTGATGGTC-TTGCGACCCTTGTTGAGCTTCTCATACTTTTCGTAGAGAGC--CTCGAAC 3335166 Query 149073 GCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACG 149132 | || |||||||| || | || ||||| || | || || ||||| || | ||| || Sbjct 3335167 TCGTCACCGTAGCAGTCAGCCAGGCCGGGACATTCGTTGGGACACATCAGAGTCCAATCG 3335226 Query 149133 CCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCG 149192 |||| | | || |||||||| || ||||| || | ||| || ||| | ||| || Sbjct 3335227 CCGTTCTTTTCAACACGCTTCATGAAGAGATCAGGAATCCACAGGGCGAGGAAGAGATCA 3335286 Query 149193 CGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGA-GCACGCTGAATATGTC 149251 || || ||||| ||| ||| || |||| | | || | ||| | ||| Sbjct 3335287 CGTGCGCGAACTTCTTCCTTGCCATGGTTCTTTCGGAGGTCCATGAACTC-GAACACGTC 3335345 Query 149252 CGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTC 149308 ||| ||||| ||||||| ||| | |||| ||||| |||| ||||| || || || Sbjct 3335346 CGCATGCCAAGGCTCAAGGTAGATTGCGAAAGCGCCTGGGCGCTTGTTGCCACCTTGATC 3335405 Query 149309 GACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCAC---TGGCAGT 149365 || | || | |||| || || ||||| | ||| || |||| ||| ||| ||| Sbjct 3335406 CACATAACGAGCAGTGTTATTGAAGACTCGCAGCATGGG---AATGACACCGTTGGAAGT 3335462 Query 149366 GCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGAT 149425 ||| || || ||| ||| || || | ||| | ||||| ||| || Sbjct 3335463 GCCATTGGTGCCCGCGATGTATGAACCGGTGGCACGGATACGGTGGATGTTGAGGCCAAT 3335522 Query 149426 GCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGA 149484 || || ||| | ||| ||||| || ||| ||| || ||| |||||||| | Sbjct 3335523 ACCACCAGCCAT-CTTGGAGATCATTGCACAGGTCTTGAGGGTGTCGTAAATGCCCTCAA 3335581 Query 149485 TGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGG 149544 ||||||| ||||||| | || ||||| || ||| ||| | | | ||||| | Sbjct 3335582 TGCTGTCATCCTTCATGTCGACTAGGAAGCATGAAGACAGTTGAGCCTGAGGGGTGCCCG 3335641 Query 149545 CCGCGAACATGGTGGGGCTGGCGTGTGT-AAAATATTTCTGGCTCATCATCTCGTACGAC 149603 | ||| | ||| || ||| ||||| |||| || |||| ||||| | ||| | Sbjct 3335642 CATTGAAGAGGGTTGGCGAGGCATGTGTGAAAAACTTGCTGG-ACATCAAGTTGTAGGTT 3335700 Query 149604 TCGAGCACGCGGTCCA---TGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATA 149660 || | || || || | |||| || ||| ||| || | || || ||||| | ||| Sbjct 3335701 TCAATGACTCGCTCAACATTGTC-TCCCCA--GATACCGACAGCAACACGCATGATCATG 3335757 Query 149661 TGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTC 149720 ||||| |||||||| | | ||| ||| ||| || | |||| | |||| || Sbjct 3335758 TGCTGGGGTCGCTCAACGATCTTGCCATCAAGTTTAAGGAGGTAGGATCTCTCTAAAGTT 3335817 Query 149721 TTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGGCGGCGTC 149773 ||| | || || || | ||||| ||||| ||| | | ||||||||| ||| Sbjct 3335818 TTGAAACCGAAATATTGGTAGTTGAAGTCTCGGTCATACACAATGGCGGAGTC 3335870 >seq35 Length=2560152 Score = 122 bits (134), Expect = 8e-23 Identities = 148/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || |||||||| | || || || |||||||||||||||| Sbjct 153137 GTCGACTCCTTCTGAATGTTGTAATCAGATAGGGTTCGGCCG--TCCTCGAGCTGCTTGC 153194 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | ||||| ||||| || |||||||| |||||||| |||||| || Sbjct 153195 CGGCGAAGATCAATCGCTGTTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTGGACT 153254 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| |||| ||||| || || || || || | Sbjct 153255 TGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTCCCCGTAAGGG 153314 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||| ||||| ||||||||| Sbjct 153315 TTTTGACGAAGATCTGCATG 153334 >seq33 Length=3634720 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| || | ||| ||| |||||| | || Sbjct 1474271 ATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGTTCGACC-GTCCTCCAACT 1474329 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||||||| | ||||| ||||||||||| || |||||||| |||||||| |||| Sbjct 1474330 GCTTGCCCGCGAAGATGAGTCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCT 1474389 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | || | || |||| | ||| || |||| |||| || ||||||| Sbjct 1474390 TGGACTTTACGTTATCGATGGTATCGGATGACTCAACCTCGAGAGTGATCGTCTTGCCGG 1474449 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || ||||| |||||||| Sbjct 1474450 TGAGGGTCTTGACGAAGATCTGCAT 1474474 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| ||| | || | ||||||||||| || ||||| || |||||| Sbjct 1474548 TCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATTCCCTCCTTG 1474607 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | || || | | ||| || || | ||||| | Sbjct 1474608 TCCTGGATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCAAGGGTGATG 1474667 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||| || || |||||||| |||||||| Sbjct 1474668 GTCTTGCCGGTGAGGGTCTTTACGAAGATCTGCAT 1474702 Score = 86.0 bits (94), Expect = 6e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| | || | | | |||||||||| Sbjct 1474727 ATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCA-TCCTCGAGCT 1474785 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || || ||||||||||| || || || || |||||||| ||||| Sbjct 1474786 GCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCT 1474845 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | || | || || | | |||||| || | ||||| ||| || || | Sbjct 1474846 TCGACTTGACGTTGTCGATAGTATCCGAAGACTCCACCTCAAGGGTGATGGTCTTTCCAG 1474905 Query 133636 T 133636 | Sbjct 1474906 T 1474906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420582460640