Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq33 114 3e-20
seq35 84.2 5e-11
>seq33
Length=3634720
Score = 114 bits (126), Expect = 3e-20
Identities = 146/201 (73%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || ||||| ||||| || || || |||||||| || ||||||
Sbjct 1474243 CAGATCTTCGTCAAGACCCTCACCGGAAAGACCATTACGTTGGAAGTAGAGTCGTCTGAC 1474184
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
||| |||| |||||| |||||||| || || || || || || ||| |||
Sbjct 1474183 ACAATCGACAACGTAAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAGCAA 1474124
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| ||||||||||| || |||||| ||||||| || | || || ||| |||||| ||
Sbjct 1474123 CGTCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAACATC 1474064
Query 206353 CAGAAAGAGTCTACTCTTCAC 206373
||||| |||||||| || |||
Sbjct 1474063 CAGAAGGAGTCTACGCTCCAC 1474043
Score = 87.8 bits (96), Expect = 4e-12
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || ||||| || || ||||||||| | || || || || ||
Sbjct 1474471 CAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCCGAT 1474412
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| |||||| ||||||||||| || || || || || ||| ||
Sbjct 1474411 ACCATCGATAACGTAAAGTCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAGCAG 1474352
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|||| |||||||| || ||||||||||| || || | || | | || |||||| |
Sbjct 1474351 CGACTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGAACGCTCTCGGACTACAACATT 1474292
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| |||||||| || || || ||
Sbjct 1474291 CAGAAGGAGTCTACCCTCCATCTCGT 1474266
Score = 84.2 bits (92), Expect = 5e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || ||||| || || || ||||| | || || || ||| || || ||||
Sbjct 1474687 AAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCGGATACCATCGACAAC 1474628
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || || ||||| || ||| || || | ||||||
Sbjct 1474627 GTCAAGTCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAGCGATTGATCTTC 1474568
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| |||||| | || ||||| | || | |||| |||||| ||||||| || |||
Sbjct 1474567 GCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAATCT 1474508
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
||||||||| | ||| | |||| ||
Sbjct 1474507 ACTCTTCACTTGGTTCTCCGACTCCG 1474482
>seq35
Length=2560152
Score = 84.2 bits (92), Expect = 5e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || |||||| || || || || || ||||| | || ||||| ||| |||
Sbjct 153330 CAGATCTTCGTCAAAACCCTTACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCCGAC 153271
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| ||||| || || || || ||| ||| ||
Sbjct 153270 ACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAACAG 153211
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| | ||||||||||| |||||| | || || || | || | | ||||||||| |
Sbjct 153210 CGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTATCTGATTACAACATT 153151
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391
||||| ||||| ||| | ||||| || || | || |||
Sbjct 153150 CAGAAGGAGTCGACTTTGCACCTGGTGCTGCGTCTACGA 153112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181820254885156
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |