Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq12 138 1e-27 seq33 105 6e-18 >seq12 Length=4789767 Score = 138 bits (152), Expect = 1e-27 Identities = 292/430 (68%), Gaps = 7/430 (2%) Strand=Plus/Plus Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661 |||||||||| |||||||||| || | ||| ||||||||| |||||| |||||||| || Sbjct 3335193 GGGACATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTCAACACGCTTCATGAA 3335252 Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCAT 131721 | ||| || | ||| | ||| || ||||| | || ||||| | || || Sbjct 3335253 GAGATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGCC-AT 3335311 Query 131722 AAtttttttCAAATTTAAA-AAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTG 131780 || ||| | | | || || || | |||||||||||| || || | || | || Sbjct 3335312 GGTTCTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTG 3335371 Query 131781 CCATTGCGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATA 131837 | | |||||| |||| || || ||||||| |||| |||| | |||| ||| | | Sbjct 3335372 CGAAAGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGAAGA 3335431 Query 131838 CGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCAT 131897 | |||| |||||| | |||||||| | |||||||||| | ||||| || Sbjct 3335432 CTCGCAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGTATGAACCGG 3335491 Query 131898 TGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCC-GCCGTATTTAGAGATTAGTGCG 131956 |||| | ||| ||| | |||||| |||||||| || ||| | || ||||| | ||| Sbjct 3335492 TGGCACGGATACGGTGGATGTTGAGGCCAATACCACCAGCCAT-CTTGGAGATCATTGCA 3335550 Query 131957 CATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAG 132016 || | | || |||| || || || || | |||||| | |||||||||| ||| Sbjct 3335551 CAGGTCTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAG 3335610 Query 132017 CAAGAGGACA 132026 || || |||| Sbjct 3335611 CATGAAGACA 3335620 >seq33 Length=3634720 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||||| || | || || || | |||||| || || || || ||||||||||| Sbjct 1474019 GCCGCCGCGCAGACGGAGGACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCT 1474078 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | |||| ||||||| ||||| ||||| ||| | || ||||| || || || || || Sbjct 1474079 CAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGG 1474138 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| ||||| |||||| || | | | || | ||||| | | || || Sbjct 1474139 GATACCCTCCTTATCCTGAATCTTGGACTTTACGTTGTCGATTGTGTCAGACGACTCTAC 1474198 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| | || || | || || || || || || || ||||| ||||| Sbjct 1474199 TTCCAACGTAATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 1474246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934213560032