Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq12 183 4e-41 seq3 95.1 2e-14 >seq12 Length=4789767 Score = 183 bits (202), Expect = 4e-41 Identities = 1106/1752 (63%), Gaps = 59/1752 (3%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAG 110422 ||||| |||||||| |||||||| || || | ||||| || | |||||| | | Sbjct 3334042 CGGAGGTAGTACATTCCGGTCTTAAGACCGAGCTTCCAGCCGGCGAAATGCATGCTGGTG 3334101 Query 110423 AGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGA 110480 | |||| ||| || || || ||| || ||||| ||| |||| | ||||||| Sbjct 3334102 ATCTTGCCCATAGTCGGGTCTTTCATATGGATGTTCAAGGACTGAGACT--GATCAATGA 3334159 Query 110481 AGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTA-ATTTCCCAAACTGTG 110539 || || || | || ||||| | | ||| | | | | |||||||| || || Sbjct 3334160 AGGCACCGCGGTCGGCAGCCATCTGGACAACAGTACGC-TGTGAGATTTCCCAGACAGTC 3334218 Query 110540 CGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCC 110599 ||||| |||||||| | ||||| | || || ||||||| ||| || | Sbjct 3334219 TTGTAGAGGGCTTTGATATCTGCGGGGATGTTTGGAATGTTCTGGACGGAGCC----GTT 3334274 Query 110600 TTCACCA-TGAGA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATT 110655 |||| || ||| | | |||||| | | ||||| | || || | || || || Sbjct 3334275 TTCAGCAATGATACGGTTCTTCATGGCGTCAGACCACAAGCCCATGTCAACCAGATCCTT 3334334 Query 110656 GACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTT 110715 | ||| |||||| | ||||| || || ||| ||| | ||||||| || Sbjct 3334335 TAGGAGCCAAGGGTTGACGACCTGGAACTCGCCAGCAAGGACTCTGCGTTGGTAGATATT 3334394 Query 110716 TGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGG 110775 | |||||| || |||||||| || || ||||||||||| || | || ||| || || Sbjct 3334395 GGATGTGTACGGCTCAAAGCACTCGTTGTTACCCAAGATCTGGGAAGTACTGGCGGTAGG 3334454 Query 110776 CATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAAC 110835 ||||||||| | | |||||||| |||| || | | ||||||| | ||||| || Sbjct 3334455 CATTGGTGCTACTAGCAGACTGTTGCGAATGCCATGCGCCTTGATTTGCTCCTTCAGCGA 3334514 Query 110836 ATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCT 110893 |||||| | || | | || ||||| || ||||||||||||||| || | ||| Sbjct 3334515 TGCCCAGTCCCAAAGAT-CGGAAGGCTTCACATT-CCACATGTCAAACTGCAGAATGCCT 3334572 Query 110894 TGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAG 110953 || || | ||||| || || | || || | ||||| | | || | || | Sbjct 3334573 TGAGATACAGGAGAGCCTTCGTATGTGGAGTATGGGCCTTGCTCCTTGGCAAGCTCCATG 3334632 Query 110954 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 111013 || || | || || || || || ||||| || | |||| ||| || Sbjct 3334633 GAAGCAGTGAGAGCGGCATGGTAAATTGTCTCAAATATCTGCTTGTTCAGCTCTCGTGCC 3334692 Query 111014 TCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCC 111073 ||| || || || | ||| | || |||| || ||||| ||||| || Sbjct 3334693 TCAGGAGACTCGAAAGGCAGGCGAAGGGCTAGGAACGCATCTGCAAGACCCTGAACGCCG 3334752 Query 111074 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 111133 | |||||| || ||||| ||||| || || | || | |||||| || | || Sbjct 3334753 ACACCAATGGGCCTGTGGCGCATGTTGCTGTTCTGTGCTTCCGGAACGGGGTAGTAGTTG 3334812 Query 111134 CTGTCAATGACTCGGTTTAGATTTTTG-GTAACAATCTTTGTGATTTCATGAAGTTTTTC 111192 ||| |||| || || | ||| | ||||| | || | || || || |||| Sbjct 3334813 ACGTCGATGA-TCTTATTCAAGTTTCGAACAACAACTTCGGTAACATCGTGCAGCTTTTG 3334871 Query 111193 ATAATCAAAAGTGCGAGTCTCTTCATTG------ACATACTTTGGAAGGGCGATTGATGC 111246 | ||| | || || |||||||| ||| | || | ||| | || || Sbjct 3334872 GAAGTCATA---GC-AG--CCTTCATTGTAGTCCACAAAGGACGGCAAGGCCAGCGAAGC 3334925 Query 111247 CAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTT 111306 ||| ||||| || || |||||| | |||||| | || || || || | || Sbjct 3334926 CAAGTTGCAGACGGCGACCTCATCGGGGGCGCAGTACTCGATGATCTCCGTGCAGAGATT 3334985 Query 111307 GGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTA 111366 ||| || || || || | |||||| ||||| ||||| ||||| ||||| ||||| Sbjct 3334986 GGAGCTGCGGATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGATTGCAAGCATCTTTGTA 3335045 Query 111367 GAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGG 111425 ||||||| | || | || || || ||||| | | || || || | ||||| | || | Sbjct 3335046 GAGCATGAAAGGGTTTCCGGTTTCAGTCTGGGCCTCTAGGATGGCATACCAAAGCTTCTG 3335105 Query 111426 CGGCTGGTACAATGGCGTTG-GCCCGTCCCTCCGC--CTCGTACTTTGTGTAGAGGGCTT 111482 | || | |||| ||| | || | | || ||| |||||| |||||| || | Sbjct 3335106 TGCCTTG----ATGGTCTTGCGACCCTTGTTGAGCTTCTCATACTTTTCGTAGAGAGCCT 3335161 Query 111483 CAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACC 111542 | ||||| ||||| ||| | || || || | || ||||| | |||| || Sbjct 3335162 CGAACTCGTCACCGTAGCAGTCAGCCAGGCCGGGACATTCGTTGGGACACATCAGAGTCC 3335221 Query 111543 ATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGA 111602 | | || | ||||| ||||||||||| || || ||||||||||||| |||| Sbjct 3335222 AATCGCCGTTCTTTTCAACACGCTTCATGAAGAGATCAGGAATCCACAGGGCGAGGAAGA 3335281 Query 111603 GATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGA 111662 |||| | ||| | ||||| | || ||||| ||| | || | |||||| | | Sbjct 3335282 GATCACGTGCGCGAACTTCTTCCTTGCCATGGTTCTTTCGGAGGTCCATGAACTCGAACA 3335341 Query 111663 TATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAG 111716 ||||| ||||| |||||||| |||| ||||| || || | | ||| ||| Sbjct 3335342 CGTCCGCATGCCAAGGCTCAAGGTAGATTGCGAAAGCGCC---TGGGCGCTTGTTGCCAC 3335398 Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776 |||||| ||||| || || ||| || || || || ||||| ||||| | ||| | | Sbjct 3335399 CTTGATCCACATAACGAGCAGTGTTATTGAAGACTCGCAGCATGGGAATGACACCGTTGG 3335458 Query 111777 ATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCC 111836 | ||||| || ||| || || |||| | | | ||||||| | | Sbjct 3335459 AAGTGCCATTGGTGCCCGCGATGTATGAACCGGTGGCACGGATACGGTGGATGTTGAGGC 3335518 Query 111837 CAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGT 111896 ||||||| |||||| ||| ||||| ||||| | | || || | || || || | Sbjct 3335519 CAATACCACCAGCCATCTTGGAGATCATTGCACAGGTCTTGAGGGTGTCGTAAATGCCCT 3335578 Query 111897 TGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTAC 111956 || ||| ||||| || ||| |||||||| |||| || | || || | Sbjct 3335579 CAATGCTGTCATCCTTCATGTCGACTAGGAAGCATGAAGACAGTTGAGCCTGAGGGGTGC 3335638 Query 111957 CAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTA 112014 | ||||||||||||||||| | || || ||| | | |||| ||||||| || ||| Sbjct 3335639 CCGCATTGAAGAGGGTTGGCGAGGCATGTGTGA--AAAACTTGCTGGACATCAAGTTGTA 3335696 Query 112015 TGTCTCCAAGACAGAATCAA---TGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAA 112071 || || | ||| |||| ||||| ||| ||| |||| || || ||||||| Sbjct 3335697 GGTTTCAATGACTCGCTCAACATTGTCTCCCC---AGATACCGACAGCAACACGCATGAT 3335753 Query 112072 CATGTACTGTGG 112083 ||||| ||| || Sbjct 3335754 CATGTGCTGGGG 3335765 >seq3 Length=2371949 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 ||||||||||| ||||| || || || || || ||||| |||||||||||||| || Sbjct 2245345 TGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAGACCTGGCATGAGGCCA 2245404 Query 122731 CGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||||||| | || | ||| || | ||| |||||||||||| || || Sbjct 2245405 CGCTTCTTCAACCAGAAGATGGAAGCA-AAGGCACCGCTGAAGAAGATACCTTCGACGGC 2245463 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 || || |||| ||| |||| ||||||| Sbjct 2245464 AGCGAAGGCAACAAGACGTTGAGCGAAGG 2245492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031717385600