Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq12 172 7e-38 seq3 109 7e-19 seq15 82.4 9e-11 >seq12 Length=4789767 Score = 172 bits (190), Expect = 7e-38 Identities = 1174/1865 (63%), Gaps = 75/1865 (4%) Strand=Plus/Plus Query 117798 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 117857 |||| | ||||||| ||||| ||| || | | |||||||||||||| || ||| Sbjct 3334003 TCAACGGTGAACTGGATGGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATTCCGGTC 3334062 Query 117858 TTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTT 117917 || || || |||||||| | | |||||| || | |||| | || || | Sbjct 3334063 TTAAGACCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATAGTCGGGTCT 3334122 Query 117918 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATA 117977 | ||| || ||||| || || ||||| |||||| || || || || ||||| Sbjct 3334123 TTCATATGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCGGCAGCCATC 3334182 Query 117978 TCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCT 118037 | | ||| | ||||||||| |||||| |||||||| || ||||| | Sbjct 3334183 TGGACAACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGGGCTTTGATATCTGCG 3334242 Query 118038 GGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCA-TGAGA---TCCTTCAT 118093 ||||| | || || |||| ||| || | || | || ||| | | |||||| Sbjct 3334243 GGGATGTTTGGAATGTTCTGGACGGAGCC----GTTTTCAGCAATGATACGGTTCTTCAT 3334298 Query 118094 ATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAAC 118153 | | ||||| | || || | ||||||| | ||| ||||| || Sbjct 3334299 GGCGTCAGACCACAAGCCCATGTCAACCAGATCCTTTAGGAGCCAAGGGTTGACGACCTG 3334358 Query 118154 AAACTCACCCGCGAGGG---TGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCA 118210 ||||| || || ||| ||||| | |||||||||| ||||| ||||||||||| Sbjct 3334359 GAACTCGCCAGCAAGGACTCTGCGTT---GGTAGATATTGGATGTGTACGGCTCAAAGCA 3334415 Query 118211 CTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCT 118270 ||| |||||||||||||| |||| || ||| || ||||| ||||| | || || || Sbjct 3334416 CTCGTTGTTACCCAAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACT 3334475 Query 118271 GTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGC-T 118329 ||| || | || | || | || | ||||| || | ||||||| | || | Sbjct 3334476 GTTGCGAATGCCATGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCA-AAGATCGG 3334534 Query 118330 TTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAA 118389 | || | | | |||||| |||||||| || || ||||| || | || || || || Sbjct 3334535 AAGGCTTCACATTCCACATGTCAAACTGCAGAATGCCTTGAGATACAGGAGAGCCTTCGT 3334594 Query 118390 ATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGAT 118449 |||| |||||||| | ||| || | || | || ||| || || || | Sbjct 3334595 ATGTGGAGTATGGGCCTTGCTCCTTGGCAAGCTCCATGGAAGCAGTGAGAGCGGCATGGT 3334654 Query 118450 ACATTGTTTCAAAAATGCGAGCATTCATTGC-CTTG-GCCTCGTCGGAATCAAACGCGAG 118507 | ||||| ||||| || | |||| || || | ||||| || || || | || Sbjct 3334655 AAATTGTCTCAAATATCTGCTTGTTCA--GCTCTCGTGCCTCAGGAGACTCGAAAGGCAG 3334712 Query 118508 TCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 118567 || | || |||| || ||||| || || |||| ||||| || | || | Sbjct 3334713 GCGAAGGGCTAGGAACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCCTGTGGCG 3334772 Query 118568 CATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 118627 ||| || ||| | || | ||||| || | || ||||| | | |||| | Sbjct 3334773 CATGTTGCTGTTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGATCTTATTCAA 3334832 Query 118628 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 118687 ||| ||||| | || | || || ||||||| | | ||| | | || | Sbjct 3334833 GTTTCGAACAACAACTTCGGTAACATCGTGCAGCTTTTGGAAGTCATAGCAGC------C 3334886 Query 118688 TTCATTG------ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTC 118741 ||||||| ||| | || | ||| | || |||| || || || | | ||| Sbjct 3334887 TTCATTGTAGTCCACAAAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTC 3334946 Query 118742 ATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAA 118801 ||| | |||||| || || |||||||| | || || || |||||||| | Sbjct 3334947 ATCGGGGGCGCAGTACTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAG 3335006 Query 118802 GTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGT 118861 ||||| || || ||| || || ||||| ||||| |||||| | || | || || Sbjct 3335007 ATTCTTCTGGTTGCTCTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGT 3335066 Query 118862 CTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGG 118920 || || |||| || || || || | ||| | | || | || | ||| ||| Sbjct 3335067 TTCAGTCTGGGCCTCTAGGATGGCATACCAAAGCTTCTG----TGCCTTGATGGTCTTG- 3335121 Query 118921 CTCGCCCCT-------CTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACG 118973 || |||| ||| ||| |||||| |||||| || || ||||| ||||| | Sbjct 3335122 --CGACCCTTGTTGAGCTT-CTCATACTTTTCGTAGAGAGCCTCGAACTCGTCACCGTAG 3335178 Query 118974 GCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGAGAGACCATTGACCACCCTCCTC 119032 || | || || || | || |||| || | |||| ||| | || || || Sbjct 3335179 CAGTCAGCCAGGCC-GGGACATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTC 3335237 Query 119033 AACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGC 119092 ||| |||||||||||||| || || ||||| || || ||||||||| || |||| | Sbjct 3335238 AACACGCTTCATGAAGAGATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAAC 3335297 Query 119093 TTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGG 119152 |||||| | || || || || | |||| || || | | ||||| ||||| || Sbjct 3335298 TTCTTCCTTGCCATGGTTCTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGG 3335357 Query 119153 TTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCT 119206 || ||||| | |||| | | ||| | || ||| | || | ||||| | Sbjct 3335358 CTCAAGGTAGATTGCGAAAG-CGCCT--GGGCGCTTGTTGCCACCTTGATCCACATAACG 3335414 Query 119207 CGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CC 119265 |||||| || || || || ||||| ||||||| ||| | ||| |||||| || || Sbjct 3335415 AGCAGTGTTATTGAAGACTCGCAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCC 3335474 Query 119266 CCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCC 119324 | ||| || || || |||| | || | |||||||| | |||||||| || ||| Sbjct 3335475 CGCGATGTATGA-AC-CGGTGGCACGGATACGGTGGATGTTGAGGCCAATACCACCAGCC 3335532 Query 119325 CACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCC 119384 ||| ||||| || || | |||| || |||| || || || || |||| || Sbjct 3335533 ATCTTGGAGATCATTGCACAGGTCTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCC 3335592 Query 119385 TTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAG 119443 || | ||| |||||||| |||| |||| ||||| || || || || |||||||| Sbjct 3335593 TTCATGTCGACTAGGAAGCATGAAGACAGTTGA-GCCTGAGGGGTGCCCGCATTGAAGAG 3335651 Query 119444 AGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCAAGAC- 119500 ||||| | || || ||| | | |||| ||||||| || |||||| || | ||| Sbjct 3335652 GGTTGGCGAGGCATGTGTGA--AAAACTTGCTGGACATCAAGTTGTAGGTTTCAATGACT 3335709 Query 119501 --GGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGT 119558 | | ||||| ||| | ||||||| | || ||||| | ||||| |||||| Sbjct 3335710 CGCTCAACATTGTCTCCCCAG---ATACCGACAGCAACACGCATGATCATGTGCTGGGGT 3335766 Query 119559 GTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCA 119618 || | | | ||||| || | ||||||| |||| || || |||| ||| Sbjct 3335767 CGCTCAACGATCTTGCCATCAAGTTTAAGGAGGTAGGATCTCTCTAAAGTTTTGAAACCG 3335826 Query 119619 AAATA 119623 ||||| Sbjct 3335827 AAATA 3335831 >seq3 Length=2371949 Score = 109 bits (120), Expect = 7e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 |||||||||||||| || |||||||| || || ||||| |||||||||||||| || Sbjct 2245345 TGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAGACCTGGCATGAGGCCA 2245404 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 ||||||||||||||||| || | | ||| | || ||||||||| || || || Sbjct 2245405 CGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCTTCGACGGCA 2245464 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGG 130175 ||||| |||| ||||| | ||| |||| Sbjct 2245465 GCGAAGGCAACAAGACGTTGAGCGAAGG 2245492 >seq15 Length=4255712 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA 14296 |||| ||||||||| ||||||||||| | ||| ||||| ||| | || || || Sbjct 2058888 CCGATGGCGTCAATCTCATCGATGAAGATGATGCATGGCGCATTCTTTCGTGCGGTAGCA 2058829 Query 14297 AAGATATCTCGCACTC-TCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 14355 || | ||||||||||| |||| ||||| || || |||||||| ||||| | || | Sbjct 2058828 AACAGATCTCGCACTCGGGATGGC-CCGACTCCGACGAACATCTCGACAAACTCGGAACC 2058770 Query 14356 G-GAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 14414 | ||| | || ||| || || ||||| || || | || ||| || || |||| Sbjct 2058769 GCTCACACT-GAAGAACGGAACTCCTGATTCGCCTGCAGTAGCCTTGGCCAGCAGCGTCT 2058711 Query 14415 TCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGAT 14457 | || || || || ||| || |||| |||||| || ||||| Sbjct 2058710 TACCTGTTCCAGGGGGCCCGGCCAGAATGGCACCGCGAGGGAT 2058668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434921704160