Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq12 210 3e-49 seq3 96.9 4e-15 >seq12 Length=4789767 Score = 210 bits (232), Expect = 3e-49 Identities = 919/1438 (64%), Gaps = 41/1438 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA---TTGATTCT 104278 || ||| ||||| ||||||| || || ||||||| |||||| |||| |||| Sbjct 3335765 CCCCAGCACATGATCATGCGTGTTGCTGTCGGTATC--TGGGGA-GACAATGTTGAGCGA 3335709 Query 104279 GTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCC 104336 ||| | || || ||| || ||||||| |||| | | ||| || || | ||||||| Sbjct 3335708 GTCATTGAAACCTACAACTTGATGTCCAGCAAGTTTT--TCACACATGCCTCGCCAACCC 3335651 Query 104337 TCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGG 104396 |||||||||| || || || | ||| |||| |||||||| ||| || |||| Sbjct 3335650 TCTTCAATGCGGGCACCCCTCAGGCTCAACTGTCTTCATGCTTCCTAGTCGACATGAAGG 3335591 Query 104397 AGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGG 104456 | ||| || | || || || | || || | | ||||| ||||| ||| || Sbjct 3335590 ATGACAGCATTGAGGGCATTTACGACACCCTCAAGACCTGTGCAATGATCTCCAAGATGG 3335531 Query 104457 CTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGA 104516 |||| |||||||| | ||||||| | | | |||| || || ||| | Sbjct 3335530 CTGGTGGTATTGGCCTCAACATCCACCGTATCCGTGCCACCGGTTCATACATCGCGGGCA 3335471 Query 104517 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 | ||||| || | ||| | ||||| ||||| || || || || ||| || || | Sbjct 3335470 CCAATGGCACTTCCAACGGTGTCATTCCCATGCTGCGAGTCTTCAATAACACTGCTCGTT 3335411 Query 104577 ATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630 |||| |||||| ||| ||| | | || || ||||| |||| |||||||| | Sbjct 3335410 ATGTGGATCAAGGTGGCAACAAGCGCCCA---GGCGCTTTCGCAATCTACCTTGAGCCTT 3335354 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 |||| ||||| | | |||||| | || | || ||||| || | || || | | Sbjct 3335353 GGCATGCGGACGTGTTCGAGTTCATGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTTC 3335294 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | || ||||||||| ||| || |||||||| ||||||||||||||| | ||||| Sbjct 3335293 GCGCACGTGATCTCTTCCTCGCCCTGTGGATTCCTGATCTCTTCATGAAGCGTGTTGAAA 3335234 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 ||| ||| ||||| |||| | ||||| || | || || || | || | | Sbjct 3335233 AGAACGGCGATTGGACTCTGATGTGTCCCAACGAATGTCCCGGCCTGGCTGACTGCTACG 3335174 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG-----GAAGAA-GGTCGGGCGACTG 104864 |||| ||||| || || || ||| |||||| ||| || || ||||| ||| Sbjct 3335173 GTGACGAGTTCGAGGCTCTCTACGAAAAGTATGAGAAGCTCAACAAGGGTCGCAAGACCA 3335114 Query 104865 CGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 104924 | || ||| || | ||| | || || || || | || || || || || | Sbjct 3335113 TCAAGG-CACAGAAGC-----TTTGGTATGCCATCCTAGAGGCCCAGACTGAAACCGGAA 3335060 Query 104925 CACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 104984 || | |||||| |||||||| || || || | ||||| || || |||||| | || Sbjct 3335059 ACCCTTTCATGCTCTACAAAGATGCTTGCAATCGCAAGAGCAACCAGAAGAATCTTGGCA 3335000 Query 104985 TGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044 ||| || ||||||||||| || || ||| | || | | | |||||| | Sbjct 3334999 CCATCCGCAGCTCCAATCTCTGCACGGAGATCATCGAGTACTGCGCCCCCGATGAGGTCG 3334940 Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGAC-- 105102 | || || ||| | || || | || | || | |||||| | | | | ||| | Sbjct 3334939 CCGTCTGCAACTTGGCTTCGCTGGCCTTGCCGTCCTTTGTGGA-CTACA-ATGAAGGCTG 3334882 Query 105103 ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGT 105162 | ||| | |||| || ||||| ||||| || ||| |||| | || | | Sbjct 3334881 CTATGACTTCCAAAAGCTGCACGATGTTACCGAAGTTGTTGTTCGAAACTTGAATAAGAT 3334822 Query 105163 TATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222 || || || | ||||||||| | || | || || ||| | ||| | || Sbjct 3334821 CATCGACGTCAACTACTACCCCGTTCCGGAAGCACAGAACAGCAACATGCGCCACAGGCC 3334762 Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGA 105282 |||||| |||| ||||||||||| || |||| ||| | ||||| | || || Sbjct 3334761 CATTGGTGTCGGCGTTCAGGGTCTTGCAGATGCGTTCCTAGCCCTTCGCCTGCCTTTCGA 3334702 Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342 || || || || | || || ||||||||||| || || || |||||||| Sbjct 3334701 GTCTCCTGAGGCACGAGAGCTGAACAAGCAGATATTTGAGACAATTTACCATGCCGCTCT 3334642 Query 105343 TGAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400 || | || ||| | || ||| | || ||||| || | || || ||| Sbjct 3334641 CACTGC--TTCCATGGAGCTTGCCAAGGAGCAAGGCCCATACTCCACATACGAAGGCTCT 3334584 Query 105401 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTA 105459 || | || ||||| | || || ||||| |||| |||| |||| || | || | Sbjct 3334583 CCTGTATCTCAAGGCATTCTGCAGTTTGACATGT-GGAATGTGAAGCCTTCCGATCTTTG 3334525 Query 105460 CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCAT 105519 ||||||| | | || ||||| | ||||||| | | || |||| |||||||| || | Sbjct 3334524 GGACTGGGCATCGCTGAAGGAGCAAATCAAGGCGCATGGCATTCGCAACAGTCTGCTAGT 3334465 Query 105520 GGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 105579 || |||||||| || ||| || | || ||||||||||| || || |||||||| || Sbjct 3334464 AGCACCAATGCCTACCGCCAGTACTTCCCAGATCTTGGGTAACAACGAGTGCTTTGAGCC 3334405 Query 105580 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 105637 ||||| | || ||||| | | ||| ||| || || ||||| | | |||||| Sbjct 3334404 GTACACATCCAATATCTACCAACGCAGAGTCCTTGCTGGCGAGTTCCAGGTCGTCAAC 3334347 >seq3 Length=2371949 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/216 (72%), Gaps = 10/216 (5%) Strand=Plus/Minus Query 94733 CAGTTCCGTGTATTCA-AAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAG 94788 ||||||| || ||| |||||| || || ||||| || ||| || || | ||| Sbjct 2245555 CAGTTCC-TGCCATCAGAAAGAAGGCTGACTGGGCCATTCGATGGATTACCGACAAGAAG 2245497 Query 94789 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848 || | |||| ||| | || || | || || || || || |||||||||||| Sbjct 2245496 TC---TACCTTCGCTCAACGTCTTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGC 2245440 Query 94849 GGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 94907 ||| |||| ||| | || | ||| | |||||||| || ||||||||||||||| || Sbjct 2245439 GGTGCCTT-TGCTTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCAGGTCTCACATT 2245381 Query 94908 CTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCA 94943 |||||||||||| ||||| || |||||||| ||||| Sbjct 2245380 CTCCAACGAGCTCATCTCGCGAGACGAGGGTCTCCA 2245345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260537532640