Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq12 212 2e-49 seq33 129 2e-24 seq2 87.8 5e-12 >seq12 Length=4789767 Score = 212 bits (234), Expect = 2e-49 Identities = 929/1462 (64%), Gaps = 10/1462 (1%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || |||||| | || || || || || ||||||| | | | | | ||| | Sbjct 2514243 GCCATCGGTATCGATCTTGGAACCACATACTCGTGTGTTGGTATCTATCGCGAGGATAGA 2514184 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 | || || || || || || || || || |||| || || || | ||| ||||| || Sbjct 2514183 ATCGAGATCATCGCGAACGACCAGGGAAATCGAACCACCCCGTCGTTCGTGGCATTCACG 2514124 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| |||| || ||| | || || || |||| || || || | || Sbjct 2514123 GACACCGAGCGTCTGATCGGAGATGCCGCCAAGAACCAAGTCGCGATGAACCCCCACAAC 2514064 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || || || ||||| ||||| || ||||| | | || || ||| || | Sbjct 2514063 ACAGTCTTCGATGCGAAGCGCCTCATTGGCCGCAAGTTCTCCGACTCGGAGGTGCAGGCC 2514004 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 ||| | || || || || || | | | || | ||| || | | || | | ||| Sbjct 2514003 GATATGAAGCACTTCCCATTCAA-GATCATCGACAAGGCGAGCA--AGCCTGTGGTCGAG 2513947 Query 349499 GTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 | || | || || || || || || || ||| || || || || ||| | || Sbjct 2513946 ATCGAGTTCAAGGGCGAGACCAAGACC-TTCACACCTGAGGAGATCAGCTCCATGATCTT 2513888 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 || || ||| || | |||||| | || | |||| | || | | || ||||| Sbjct 2513887 GGTAAAGATGCGAGAGACTGCTGAGTCTTACCTTGGTGTCCCGGTCAACAACGCCGTTAT 2513828 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 ||||| || ||||| || || ||| | ||||| || || || || ||||| ||| Sbjct 2513827 CACTGTCCCCGCCTACTTCAACGATTCTCAGCGACAAGCCACCAAGGACGCTGGTCTCAT 2513768 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 || || | || ||||| |||| || ||||| || |||||||| || ||||| || || Sbjct 2513767 CGCAGGCCTCAACGTTCTCCGAATCATCAATGAGCCTACTGCTGCCGCCATTGCTTACGG 2513708 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 ||||| || | || ||| || |||| |||| || |||||| | |||||||| || Sbjct 2513707 TCTTGACAAGAAGATTGAGGGCGAGCGAAATGTTCTCATCTTTGATCTCGGTGGTGGCAC 2513648 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 ||| ||||| || || || || | || || || || || || || || | || ||||| Sbjct 2513647 TTTCGATGTTTCTCTCCTGACTATCGAGGAAGGTATCTTCGAGGTCAAGTCGACCGCTGG 2513588 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 |||||| || | ||||| || || || || || ||||| || || || || || || Sbjct 2513587 TGATACCCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTCAACGA 2513528 Query 349918 ATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAA 349976 || ||||| ||||| || | || | || | | || |||| || || Sbjct 2513527 GTTCAAGCG-CAAGCACAAGAAGGACCTGTCCTCCAACGCCCGTGCGCTGCGACGACTCC 2513469 Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036 ||||||| || || ||||| ||||| || | || || | |||| ||||| || || | Sbjct 2513468 GAACTGCCTGCGAGCGTGCCAAGCGCACCCTGTCCTCGTCGGCCCAGACCTCCATCGAGA 2513409 Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 | || ||||| ||| || | ||||||| | || || || || || || || |||| Sbjct 2513408 TCGACTCTCTCTTTGAGGGTATTGATTTCTACACCTCCATCACCCGAGCCCGATTCGAAG 2513349 Query 350097 AATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATG 350156 | || || |||||| || || | || | | ||||| || || | |||| Sbjct 2513348 AGTTGTGCCAGGATCTCTTCCGATCCACCCTCCAGCCTGTCGACCGTGTCCTCTCGGATG 2513289 Query 350157 CAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTC 350216 | || || ||| ||| | | || | || | || || ||||| || ||||| | Sbjct 2513288 CCAAGATCGACAAGTCCCAGGTCCACGAGATCGTCCTTGTCGGCGGTTCCACCCGTATCC 2513229 Query 350217 CAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTA 350276 | | | || || | | | || | || || || || || || | || || | Sbjct 2513228 CCCGAATCCAGAAGCTCATCACCGACTACTTCAACGGAAAGGAGCCCAACAAGTCCATCA 2513169 Query 350277 ATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATA 350336 | || ||||| |||||||| || || || ||||| ||||| | || || ||||| | | Sbjct 2513168 ACCCCGATGAGGCTGTTGCCTACGGCGCCGCTGTCCAGGCCGCCATCTTGTCTGGTGACA 2513109 Query 350337 AGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGAT 350393 || || || || | || || || ||||| | || || || || || Sbjct 2513108 CCTCCTCCAAGGGAACCAGCGAGATCTTGCTTCTCGATGTTGCCCCGCTCTCTCTCGGTA 2513049 Query 350394 TAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAA 350453 | || ||| |||||| | ||||| || || || |||| | ||| | ||||| | Sbjct 2513048 TCGAGACTGCTGGTGGCATGATGACCAAGCTCATCCCGCGAAACACCACTATCCCTACCA 2512989 Query 350454 AAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTAT 350513 | |||||| | || ||||| || |||| || ||||| | || || || || | Sbjct 2512988 AGAAGTCCGAGGTCTTCTCTACCTTCTCAGACAACCAGCCTGGTGTGCTCATCCAGGTCT 2512929 Query 350514 TTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTG 350573 || ||||| ||| ||||| || || || || || || | || || | | Sbjct 2512928 ACGAGGGTGAGCGTCAGCGCACCAAGGACAACAACCTTCTCGGCAAGTTCGAGCTTACCG 2512869 Query 350574 AAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAA 350633 || ||||| || |||| ||||||||||| || ||| | |||||| ||||| | | Sbjct 2512868 GCATCCCACCTGCACCCCGAGGTGTTCCTCAGATCGAGGTCACCTTCGATCTTGATGCCA 2512809 Query 350634 ATGGTATTTTAAATGTTACCGC 350655 ||||||| | || ||| |||| Sbjct 2512808 ATGGTATCATGAACGTTTCCGC 2512787 >seq33 Length=3634720 Score = 129 bits (142), Expect = 2e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | || ||||| | ||||||||||| || || || || || || || Sbjct 1474472 CATACCACCACGGAGTCGGAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTC 1474531 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| || || || || || || ||||| | || ||||| || || Sbjct 1474532 GGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGG 1474591 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || ||||| || || ||||| || || | || || || || || | ||| || | || Sbjct 1474592 GGGGATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTC 1474651 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| ||||| || || ||||| || |||||||| Sbjct 1474652 GACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTTACGAAGATCTGCAT 1474702 Score = 118 bits (130), Expect = 3e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 140535 TGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGT 140594 || || |||||||| || || || || || || | || || || ||||| || || Sbjct 1474044 TGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCTTCCAGCTGC 1474103 Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || ||||| ||||| ||||||||||| || || || || || || ||||||||||| || Sbjct 1474104 TTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATCCTGAATCTTG 1474163 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | ||||| || || || | ||||| | || ||||| | |||| ||||||||||| Sbjct 1474164 GACTTTACGTTGTCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGTCTTTCCGGTG 1474223 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || || || || || |||||||| Sbjct 1474224 AGGGTCTTGACGAAGATCTGCAT 1474246 Score = 118 bits (130), Expect = 3e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || |||||||| || ||||| || || || || || || Sbjct 1474700 CATACCGCCACGAAGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 1474759 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| || || || || ||||||||||| || || ||||| || || Sbjct 1474760 GGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGG 1474819 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||||| || || ||||| || || | || || || || || | ||| || | || Sbjct 1474820 GGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATAGTATCCGAAGACTC 1474879 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 || ||||| || | |||||||| || | ||| Sbjct 1474880 CACCTCAAGGGTGATGGTCTTTCCAGTGACTGT 1474912 >seq2 Length=5100555 Score = 87.8 bits (96), Expect = 5e-12 Identities = 131/183 (72%), Gaps = 5/183 (3%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAA--CAGTAACTGATGCTGTTATTA 349619 ||||||||||| | |||||| || ||||| || || |||| | |||| || | | Sbjct 1143673 AAAATGAAGGAGACTGCTGAGGCCTATTT--GTCCAAGCCAGTCAAGAATGCCGTCGTCA 1143730 Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679 | || ||||||||||| |||||| |||| ||| || || || || |||||| ||| Sbjct 1143731 CAGTGCCAGCCTATTTCAATGATTCCCAACGTCAAGCTACCAAGGACGCTGGCCAAATTT 1143790 Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739 | || || || ||||| || | | || || ||||||||||| || |||| || ||| Sbjct 1143791 CCGGATTGAACGTTCTCCGAGTCGTCAACGAGCCCACTGCTGCCGCCCTTGCCTA-CGGC 1143849 Query 349740 TTG 349742 ||| Sbjct 1143850 TTG 1143852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253701088908