Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq12 286 4e-72 seq3 111 2e-19 >seq12 Length=4789767 Score = 286 bits (316), Expect = 4e-72 Identities = 919/1417 (65%), Gaps = 32/1417 (2%) Strand=Plus/Plus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGC-CT 78565 ||||||||| || ||| | ||| ||||||| |||| ||||||||||| ||||| || Sbjct 3334359 GAACTCGCCAGCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGCTC-AAAGCACT 3334417 Query 78566 CGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAAT 78625 ||||||| |||| |||||||| || |||||| ||||| ||||| || || ||| | Sbjct 3334418 CGTTGTTACCCAAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACTGT 3334477 Query 78626 TCCGAAGACCATGCGTCTTGATCTCGACCTTTAG----GCC--GTCCCAAAATTCATTCG 78679 | |||| ||||||| |||||| | |||| || ||| |||||||| || | Sbjct 3334478 TGCGAATGCCATGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCAAAGATCGGAAG 3334537 Query 78680 CCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACG 78739 | | ||||||||| || || || || | || | || || || | | | | Sbjct 3334538 GCTTCACATTCCACATGTCAAACTGCAGAATGCCTTGAGATACAGGAGAGCCTTCGTATG 3334597 Query 78740 TCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGC-AGGGCCGCGTGGTAC 78798 | ||| | || | ||||||||| || || |||| || || || || ||||| Sbjct 3334598 TGGAGTATGGGCCTTGCTCCTTGGCAAGCTC-CATGGAAGCAGTGAGAGCGGCATGGTAA 3334656 Query 78799 ACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCG 78858 | | ||| || || |||||| ||||| || |||| | ||||| | |||| Sbjct 3334657 ATTGTCTCAAATATCTGCTTGTTCAGCTCTCGTGCCTCAGGAGACTCGAAAGGCAGGCGA 3334716 Query 78859 AGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATG 78918 || | ||| |||| || || ||||| ||||||| | | || || | |||||||||| Sbjct 3334717 AGGGCTAGGAACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCCTGTGGCGCATG 3334776 Query 78919 TTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTA 78978 ||||| || | || || ||||| |||| ||||||| |||| ||| Sbjct 3334777 TTGCTGTTCTGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGATCTTATTCAAGTTT 3334836 Query 78979 CGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTTTGATG 79038 || || || || || |||| || || ||| ||| | | | ||| | Sbjct 3334837 CGAACAACAACTTCGGTAACATCGTGCAGCTTTTGGAAGTCATAGCAGCCTTCATTGTAG 3334896 Query 79039 ------AAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTA 79092 || | ||| | | |||||| |||| |||||| ||||| ||| || ||| Sbjct 3334897 TCCACAAAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTCATCGGGGGCG 3334956 Query 79093 GAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGG 79152 | ||||||||| || ||||| | ||| || ||||||||| | ||||||||| Sbjct 3334957 CAGTACTCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAGATTCTTCTGG 3335016 Query 79153 TTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGA 79212 |||||||| || || || || |||||| |||| | || | ||||| ||| ||| Sbjct 3335017 TTGCTCTTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGTTTCAGTCTGG 3335076 Query 79213 CTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGT 79272 || || | | | | ||| | | | | ||| || ||||| ||||||| Sbjct 3335077 GCCTCTAGGATGGCATACCAAAGCTTCTGTGCCTTGATGG---TCTTG---CGACCCTTG 3335130 Query 79273 GCGA------CGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGG 79326 || | ||| | ||| | | | ||| | || || ||| || | |||| Sbjct 3335131 TTGAGCTTCTCATACTTTTCGTAGAGAGCCTCGAACTCGTCACCGTAGCAGTCAGCCAGG 3335190 Query 79327 CCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATG 79386 || || || |||| || |||||||| ||| || ||| ||| ||||| || |||| Sbjct 3335191 CCGGGACATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTCAACACGCTTCATG 3335250 Query 79387 AAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446 ||||| || || ||||||||||| |||||| || || || | || || | ||| Sbjct 3335251 AAGAGATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCA 3335310 Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATG 79506 |||||| || || || | || || | | ||| || ||||| ||||| || ||||| Sbjct 3335311 TGGTTCTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGATT 3335370 Query 79507 GCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAA 79566 ||||| | || ||||||| ||| || || | || || || || ||||| ||||| Sbjct 3335371 GCGAAAGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGAAG 3335430 Query 79567 ACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCG 79626 ||||| |||||||| | || |||| || ||| || || || ||| || |||| Sbjct 3335431 ACTCGCAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGTATGAACCG 3335490 Query 79627 CTCGCCCGAAT--GTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCG 79684 | || || || | | || || || || || || || | | ||||||||| | Sbjct 3335491 GTGGCACGGATACGGTGGA--TGTTGAGGCCAATACCACCAGCCATCTTGGAGATCATTG 3335548 Query 79685 CGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGA 79744 | || |||||| || ||||| |||||||| || ||| |||||||| |||| |||| Sbjct 3335549 CACAGGTCTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGA 3335608 Query 79745 AGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCG 79804 |||| |||| || | | || || || ||||||||||| |||| || || | Sbjct 3335609 AGCATGAAGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTG 3335668 Query 79805 TGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGT 79864 |||| ||||| | ||||| | ||| || || |||| ||| | | ||| || Sbjct 3335669 TGAAAAACTTGCTGGACATCAAGTTGTAGGTTTCAATGACTCGCTCAACATTGTCTCCCC 3335728 Query 79865 GGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGG 79901 ||| ||||| || || ||||||| | || |||||| Sbjct 3335729 AGATACCGACAGCAACACGCATGATCATGTGCTGGGG 3335765 Score = 255 bits (282), Expect = 6e-63 Identities = 904/1394 (65%), Gaps = 40/1394 (3%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||||| || || ||||| ||| || ||| | | ||||||| Sbjct 3335765 CCCCAGCACATGATCATGCGTGTTGCTGTCGGTATCTGGGGAGACAATGTTGAGCGAGTC 3335706 Query 19163 CGCGAGACATACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTT 19221 || || ||| || ||||| |||| ||||| ||||| || || |||| ||||| || Sbjct 3335705 ATTGAAACCTACAACTTGATGT-CCAGCAAGTTTTTCACACATGCCTCGCCAACCCTCTT 3335647 Query 19222 CAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGA 19281 ||| || || || | | || |||| || |||||||| | ||||||||||| Sbjct 3335646 CAATGCGGGCACCCCTCAGGCTCAACTGTCTTCATGCTTCCTAGTCGACATGAAGGATGA 3335587 Query 19282 CAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGG 19341 ||||||||||||||| ||||| || |||||| || || ||||||||| | | || Sbjct 3335586 CAGCATTGAGGGCATTTACGACACCCTCAAGACCTGTGCAATGATCTCCAAGATGGCTGG 3335527 Query 19342 GGGTATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAA 19401 ||||| || || || | |||||| | | ||| || ||| || || || Sbjct 3335526 TGGTATTGGCCTCAACATCCACCGTATCCGTGCCACCGGTTCATACATCGCGGGCACCAA 3335467 Query 19402 CGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGT 19461 || || ||||| || | || ||||| || |||||||| ||||| || | || || Sbjct 3335466 TGGCACTTCCAACGGTGTCATTCCCATGCTGCGAGTCTTCAATAACACTGCTCGTTATGT 3335407 Query 19462 CAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGC 19521 | || || ||| ||| ||| ||| | ||||| |||||||| ||||| ||||| || Sbjct 3335406 GGATCAAGGTGGCAACAAGCGCCCAGGCGCTTTCGCAATCTACCTTGAGCCTTGGCATGC 3335347 Query 19522 GGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCG 19581 |||||| | || ||| | || || || |||||| || | || || | ||| || Sbjct 3335346 GGACGTGTTCGAGTTCATGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTTCGCGCACG 3335287 Query 19582 CGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGA 19641 || |||||| ||| |||||||||| || || |||||| || ||||| ||| ||| Sbjct 3335286 TGATCTCTTCCTCGCCCTGTGGATTCCTGATCTCTTCATGAAGCGTGTTGAAAAGAACGG 3335227 Query 19642 AGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGC 19701 || ||| |||||||| || ||||||| || ||||| | ||| |||||| || | Sbjct 3335226 CGATTGGACTCTGATGTGTCCCAACGAATGTCCCGGCCTGGCTGACTGCTACGGTGACGA 3335167 Query 19702 GTTCAATGAGTTGTACCGGACTTA--CGTAGC----CCAGGGCCGGTTCAAGAAGGTGGT 19755 |||| | | | ||| | || | ||| | |||| || ||||| | Sbjct 3335166 GTTCGAGGCTCTCTACGAAAAGTATGAGAAGCTCAACAAGGGTCG---CAAGA---CCAT 3335113 Query 19756 CCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTA 19815 | ||| | | | | ||| | | |||| | |||| || ||||| | || | Sbjct 3335112 CAAGGCACAGAAGCTTTGGTATGCCATCCTAGAGGCCCAGACTGAAACCGGAAACCCTTT 3335053 Query 19816 CATGTGCTACAAGGACGC-CGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCA 19874 |||| |||||| || || || | || |||| || |||||||| | ||| | ||| Sbjct 3335052 CATGCTCTACAAAGATGCTTGCAATCG-CAAGAGCAACCAGAAGAATCTTGGCACCATCC 3334994 Query 19875 AGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGT 19934 ||||| || || || || ||||| ||| | | || || ||| ||||| | Sbjct 3334993 GCAGCTCCAATCTCTGCACGGAGATCATCGAGTACTGCGCCCCCGATGAGGTCGCCGTCT 3334934 Query 19935 GTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGT------CAAGGCCTCCTCCTTCGACT 19988 | || |||| || ||| | ||||| | || || ||| | || || |||| Sbjct 3334933 GCAACTTGGCTTCGCTGGCCTTGCCGTCCTTTGTGGACTACAATGAAGGCTGCTATGACT 3334874 Query 19989 TTGCCAAA--TTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGA 20046 | ||||| || |||| || ||| || || || || ||||| ||||||| Sbjct 3334873 T--CCAAAAGCTGCACGATGTTACCGAAGTTGTTGTTCGAAACTTGAATAAGATCATCGA 3334816 Query 20047 TCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGC 20106 |||| ||||| || || | || || ||||||||| |||| || | Sbjct 3334815 CGTCAACTACTACCCCGTTCCGGAAGCACAGAACAGCAACATGCGCCACAGGCCCATTGG 3334756 Query 20107 GATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCC 20166 ||||||| ||||| || || || | ||| | || |||| | ||||| ||| Sbjct 3334755 TGTCGGCGTTCAGGGTCTTGCAGATGCGTTCCTAGCCCTTCGCCTGCCTTTCGAGTCTCC 3334696 Query 20167 CAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTC-CTGG 20225 |||| || ||||| |||||| || || ||| | | ||||| || || ||| ||| Sbjct 3334695 TGAGGCACGAGAGCTGAACAAGCAGATATTTGAGACAATTTACCATGCCGCTCTCACTGC 3334636 Query 20226 AATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGT 20285 | || || || ||||| ||| | ||||| ||| || | | | || || || | | Sbjct 3334635 TTCCATG-GAGCTTGCCAAGGAGCAAGGCCCATACTCCACATACGAAGGCTCTCCTGTAT 3334577 Query 20286 CCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCA---CTGAGAATGAGTTTTGGA--- 20339 | | || || || ||| ||||||||| || | || || ||| ||| Sbjct 3334576 CTCAAGGCATTCTGCAGTTTGACATGTGGAATGTGAAGCCTTCCGAT--CTTTGGGACTG 3334519 Query 20340 -GC-GCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCC 20397 || | || |||| | |||||| | || || |||||||| |||| || || || Sbjct 3334518 GGCATCGCTGAAGGAGCAAATCAAGGCGCATGGCATTCGCAACAGTCTGCTAGTAGCACC 3334459 Query 20398 CATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAG-GCTTTCGAGCCGTACA 20456 ||||| |||||| || |||||||| |||| ||||||||| ||||| |||||||||| Sbjct 3334458 AATGCCTACCGCCAGTACTTCCCAGATCTTGGGTAACAACGAGTGCTTT-GAGCCGTACA 3334400 Query 20457 CGACCAACATCTAC 20470 | |||| |||||| Sbjct 3334399 CATCCAATATCTAC 3334386 Score = 86.0 bits (94), Expect = 7e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 78199 TAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTG 78258 |||||||| || ||||| ||||| |||||| ||| | ||||| || | | |||| Sbjct 3334048 TAGTACATTCCGGTCTTAAGACCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTG 3334107 Query 78259 GCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCG 78318 ||| | |||||| | ||| |||||| | ||||| ||||| || ||| | |||||| Sbjct 3334108 CCCATAGTCGGGTCTTTCATATGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCG 3334167 Query 78319 CGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATG 78378 |||||||| ||||| | || || | || | || ||||||| ||| ||| | | Sbjct 3334168 CGGTCGGCAGCCATCTGGACAACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGG 3334227 Query 78379 GCCTTCAGCTCTTCCTGGATGT 78400 || || | ||| | |||||| Sbjct 3334228 GCTTTGATATCTGCGGGGATGT 3334249 >seq3 Length=2371949 Score = 111 bits (122), Expect = 2e-19 Identities = 303/455 (67%), Gaps = 18/455 (4%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || |||||||| | || || || ||| ||||| ||||||||| || | || Sbjct 2245490 TTCGCTCAACGTCTTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTT 2245431 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 | | || |||||| | || ||||||||||||||||| || || | |||||||||||| Sbjct 2245430 GCTTCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGCCAGGTCTCACATTCTCCAACGAG 2245371 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTA 60152 || || || || |||||||| |||||| || || || || | | |||||| | | | Sbjct 2245370 CTCATCTCGCGAGACGAGGGTCTCCATACTGATTTCGC-CTGTCTC-CTATTCTCTC--A 2245315 Query 60153 TTGGAAAAAT-GCCCTTCCAAGGATATTCACAAGATTGT--TCAGTG-GGCTTGTGAAGT 60208 | || ||| | || ||| | | | || ||| || || ||| || | Sbjct 2245314 CTTGAGGAATCGACCAAGCAAACAAGTGGTCCAGGATGTTATCGTTGACGCTGTCAAAAT 2245255 Query 60209 GGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGA 60268 ||| |||||| | || || || || ||||| || | || ||| |||| Sbjct 2245254 TGAGCAAGAGTTCCTGACCGAGGCTCTGCCATGTGGTCTTCTTGGCATGAACGCGACCCT 2245195 Query 60269 AATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTG-----GAGAA 60323 |||| |||||| || |||| || || || || ||| ||| | ||| ||||| Sbjct 2245194 GATGAAGCAGTATATCGAGTTCGTTGCCGATCGACTCCTGGTCGCTCTTGGCAACGAGAA 2245135 Query 60324 GGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383 || || || | ||| ||||| ||||||| ||||||| |||||| | | || Sbjct 2245134 GG---TATATAAG--GTGTCCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGGCGGC 2245080 Query 60384 AAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||| |||||||| |||| ||||| Sbjct 2245079 AAGACCAACTTCTTCGAGAAGCGAGTCGCCGATTA 2245045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524553163840