Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq12 210 2e-49 seq3 122 1e-22 seq2 107 2e-18 >seq12 Length=4789767 Score = 210 bits (232), Expect = 2e-49 Identities = 486/727 (67%), Gaps = 18/727 (2%) Strand=Plus/Minus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 ||| ||| ||| || ||| |||| ||| | |||| || || || ||| ||||||| Sbjct 3335712 GCGAGTCATTGAAACCTACAACTTGATGTCCAGCAAGTTTTTCACACATGCCTCGCCAAC 3335653 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 ||| ||||| || || || ||| |||| |||| |||||||| || | ||||| Sbjct 3335652 CCTCTTCAATGCGGGCACCCCTCAGGCTCAACTGTCTTCATGCTTCCTAGTCGACATGAA 3335593 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 ||||||| || || ||||| ||||| || |||||| ||||| ||||||||| Sbjct 3335592 GGATGACAGCATTGAGGGCATTTACGACACCCTCAAGACCTGTGCAATGATCTCCAAGAT 3335533 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAG 53470 | | |||||||| || || || || | ||| |||||| | ||| || ||| | Sbjct 3335532 GGCTGGTGGTATTGGCCTCAACA--TCCACCGTATCCGTGCCACCGGTTCATACATCGCG 3335475 Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || || || ||| || | || || | || ||||| || |||||||| ||||| || Sbjct 3335474 GGCACCAATGGCACTTCCAACGGTGTCATTCCCATGCTGCGAGTCTTCAATAACACTGCT 3335415 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 || || || | || ||||| |||||| || | ||||| |||||||| ||||| Sbjct 3335414 CGTTATGTGGATCAAGGTGGCAACAAGCGCCCAGGCGCTTTCGCAATCTACCTTGAGCCT 3335355 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 ||||| || ||| | | ||||| | || || || ||| || || | ||||| | Sbjct 3335354 TGGCATGCGGACGTGTTCGAGTTCATGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTT 3335295 Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 ||| ||||| || || || ||||||||||| || ||||||||| | || || Sbjct 3335294 CGCGCACGTGATCTCTTCCTCGCCCTGTGGATTCCTGATCTCTTCATGAAGCGTGTTGAA 3335235 Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTA 53769 ||| ||| || ||| |||||||| || ||||| || |||||||| | | || ||| Sbjct 3335234 AAGAACGGCGATTGGACTCTGATGTGTCCCAACGAATGTCCCGGCCTGGCTGACTG-CTA 3335176 Query 53770 CGGTGAGGAGTTTAACGAGATGTATCGGACGTA--CGCAGTTC----AGGGCCGCTACAA 53823 |||||| ||||| | | | || | ||| | || || |||| ||| Sbjct 3335175 CGGTGACGAGTTCGAGGCTCTCTACGAAAAGTATGAGAAGCTCAACAAGGGTCGC----- 3335121 Query 53824 GAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGG 53883 |||| ||||||| | || | ||| |||| ||||| || |||| || || || Sbjct 3335120 -AAGACCATCAAGGCACAGAAGCTTTGGTATGCCATCCTAGAGGCCCAGACTGAAACCGG 3335062 Query 53884 AACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 || || | |||| |||||| ||| | ||| ||||||||||||||||| | || Sbjct 3335061 AAACCCTTTCATGCTCTACAAAGATGCTTGCAATCGCAAGAGCAACCAGAAGAATCTTGG 3335002 Query 53944 CGTCATC 53950 | |||| Sbjct 3335001 CACCATC 3334995 >seq3 Length=2371949 Score = 122 bits (134), Expect = 1e-22 Identities = 307/454 (68%), Gaps = 16/454 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 ||||| |||| ||||| || || ||||||||||| || | | |||||||||||||| Sbjct 2245045 TAATCGGCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAGATGTTCTCCATG 2245104 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTG-CCATGAGG 74579 ||||||| ||||| |||| || ||| |||||| | || | | ||| ||| Sbjct 2245105 AAGTCGAAGGGGTTGGA--CACCTTATATAC-CTTCTCGTTGCCAAGAGCGACCAGGAGT 2245161 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 ||||| || || || | || |||||| |||| ||| | |||||| | || Sbjct 2245162 CGATCGGCAACGAACTCGATATACTGCTTCATCAGGGTCGCGTTCATGCCAAGAAGACCA 2245221 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGG--ACAATC 74696 || ||||| |||||||| | ||||| ||| | | | ||| || | ||| | Sbjct 2245222 CATGGCAGAGCCTCGGTCAGGAACTCTTGCTCAATTTTGACAGCGTCAACGATAACATCC 2245281 Query 74697 TTGTGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAA 74755 | | | | |||| || | || ||||| ||||||| | || | || ||| || Sbjct 2245282 TGGACCACTTGTTTGCTTGGTCGATT---CCTCAAGTGAGAGAATAGGAGACA-GGCGAA 2245337 Query 74756 CTCCTGATGCGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814 || ||| ||| || || |||| || | || || || || | || || |||| Sbjct 2245338 ATCAGTATG-GAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAGACCTGGCA 2245396 Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874 | || ||||||||||||||||| ||||||| | |||| ||| ||||||||||| |||| Sbjct 2245397 TGAGGCCACGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCTT 2245456 Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 |||| || ||||| ||||| ||||| ||||| Sbjct 2245457 CGACGGCAGCGAAGGCAACAAGACGTTGAGCGAA 2245490 >seq2 Length=5100555 Score = 107 bits (118), Expect = 2e-18 Identities = 182/264 (69%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 152061 GCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGC 152120 |||||| || || || | |||||| | |||| ||| |||||| ||||| |||||||| Sbjct 1460329 GCCACCGGCGAGACGTGATCCAAAATTTCCACTGGGTTCGAGGCAGTTGACGTTGTTGGA 1460388 Query 152121 GCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTG 152180 || ||||| | || || | | || || |||||| ||||||| ||||| Sbjct 1460389 ACCGACGAAGGTTTGTGCGAGGCCGATGATTGTTTGCTGCAGCGAAACTTCACCATGGTG 1460448 Query 152181 ATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAG 152240 ||||| || ||||| | |||||| || ||||| | |||||| |||| | | Sbjct 1460449 ATACGAAGTTTGCTCGGAGATGTAACCAGCCAATTCAATGACCTTCTGGTCCTTGAGAAT 1460508 Query 152241 GTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 ||||||||||| ||| |||||||| || || || || || ||||| ||||| | || Sbjct 1460509 GTTCTTCTTGAAACATGCGTAAATGACTTTTCGTTGACCAGGCTTCAATCCGTCAATAAC 1460568 Query 152301 GTGAGGAATCGAACGCTTGATGTC 152324 | || || || ||| || |||| Sbjct 1460569 GGAGGGGATGGACCGCATGTTGTC 1460592 Score = 89.7 bits (98), Expect = 6e-13 Identities = 196/292 (67%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 117311 ATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTC 117370 || ||||||| || ||||| || |||||| || ||||| | || || | |||||| Sbjct 1460303 ATATAACGAGGACTAGCAGCGTCTGAGCCACCGGCGAGACGTGATCCAAAATTTCCACTG 1460362 Query 117371 GGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTA 117430 || || | | ||| | |||||||| || || ||| |||| || | | || || || Sbjct 1460363 GGTTCGAGGCAGTTGACGTTGTTGGAACCGACGAAGGTTTGTGCGAGGCCGATGATTGTT 1460422 Query 117431 CCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGC 117490 || || | |||||||||||||||| || ||||| | | ||| || |||| Sbjct 1460423 TGCTGCAGCGAAACTTCACCATGGTGATACGAAGTTTGCTCGGAGATGTAACCAGCCAAT 1460482 Query 117491 TGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGC 117548 | | |||||| ||| ||| | ||||||||||| || || ||||| || || | Sbjct 1460483 TCAATGACCTTCTGGTCCTTGAGA--ATGTTCTTCTTGAAACATGCGTAAATGACTTTTC 1460540 Query 117549 GCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 | |||| ||||||| || || ||| ||||| || ||| || |||| Sbjct 1460541 GTTGACCAGGCTTCAATCCGTCAATAACGGAGGGGATGGACCGCATGTTGTC 1460592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215753752800