Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq12 210 2e-49
seq3 122 1e-22
seq2 107 2e-18
>seq12
Length=4789767
Score = 210 bits (232), Expect = 2e-49
Identities = 486/727 (67%), Gaps = 18/727 (2%)
Strand=Plus/Minus
Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292
||| ||| ||| || ||| |||| ||| | |||| || || || ||| |||||||
Sbjct 3335712 GCGAGTCATTGAAACCTACAACTTGATGTCCAGCAAGTTTTTCACACATGCCTCGCCAAC 3335653
Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352
||| ||||| || || || ||| |||| |||| |||||||| || | |||||
Sbjct 3335652 CCTCTTCAATGCGGGCACCCCTCAGGCTCAACTGTCTTCATGCTTCCTAGTCGACATGAA 3335593
Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412
||||||| || || ||||| ||||| || |||||| ||||| |||||||||
Sbjct 3335592 GGATGACAGCATTGAGGGCATTTACGACACCCTCAAGACCTGTGCAATGATCTCCAAGAT 3335533
Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAG 53470
| | |||||||| || || || || | ||| |||||| | ||| || ||| |
Sbjct 3335532 GGCTGGTGGTATTGGCCTCAACA--TCCACCGTATCCGTGCCACCGGTTCATACATCGCG 3335475
Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530
|| || || ||| || | || || | || ||||| || |||||||| ||||| ||
Sbjct 3335474 GGCACCAATGGCACTTCCAACGGTGTCATTCCCATGCTGCGAGTCTTCAATAACACTGCT 3335415
Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590
|| || || | || ||||| |||||| || | ||||| |||||||| |||||
Sbjct 3335414 CGTTATGTGGATCAAGGTGGCAACAAGCGCCCAGGCGCTTTCGCAATCTACCTTGAGCCT 3335355
Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650
||||| || ||| | | ||||| | || || || ||| || || | ||||| |
Sbjct 3335354 TGGCATGCGGACGTGTTCGAGTTCATGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTT 3335295
Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710
||| ||||| || || || ||||||||||| || ||||||||| | || ||
Sbjct 3335294 CGCGCACGTGATCTCTTCCTCGCCCTGTGGATTCCTGATCTCTTCATGAAGCGTGTTGAA 3335235
Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGGGTGTCTA 53769
||| ||| || ||| |||||||| || ||||| || |||||||| | | || |||
Sbjct 3335234 AAGAACGGCGATTGGACTCTGATGTGTCCCAACGAATGTCCCGGCCTGGCTGACTG-CTA 3335176
Query 53770 CGGTGAGGAGTTTAACGAGATGTATCGGACGTA--CGCAGTTC----AGGGCCGCTACAA 53823
|||||| ||||| | | | || | ||| | || || |||| |||
Sbjct 3335175 CGGTGACGAGTTCGAGGCTCTCTACGAAAAGTATGAGAAGCTCAACAAGGGTCGC----- 3335121
Query 53824 GAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGG 53883
|||| ||||||| | || | ||| |||| ||||| || |||| || || ||
Sbjct 3335120 -AAGACCATCAAGGCACAGAAGCTTTGGTATGCCATCCTAGAGGCCCAGACTGAAACCGG 3335062
Query 53884 AACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943
|| || | |||| |||||| ||| | ||| ||||||||||||||||| | ||
Sbjct 3335061 AAACCCTTTCATGCTCTACAAAGATGCTTGCAATCGCAAGAGCAACCAGAAGAATCTTGG 3335002
Query 53944 CGTCATC 53950
| ||||
Sbjct 3335001 CACCATC 3334995
>seq3
Length=2371949
Score = 122 bits (134), Expect = 1e-22
Identities = 307/454 (68%), Gaps = 16/454 (4%)
Strand=Plus/Plus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
||||| |||| ||||| || || ||||||||||| || | | ||||||||||||||
Sbjct 2245045 TAATCGGCGACTCGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAGAGAGATGTTCTCCATG 2245104
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTG-CCATGAGG 74579
||||||| ||||| |||| || ||| |||||| | || | | ||| |||
Sbjct 2245105 AAGTCGAAGGGGTTGGA--CACCTTATATAC-CTTCTCGTTGCCAAGAGCGACCAGGAGT 2245161
Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639
||||| || || || | || |||||| |||| ||| | |||||| | ||
Sbjct 2245162 CGATCGGCAACGAACTCGATATACTGCTTCATCAGGGTCGCGTTCATGCCAAGAAGACCA 2245221
Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGG--ACAATC 74696
|| ||||| |||||||| | ||||| ||| | | | ||| || | ||| |
Sbjct 2245222 CATGGCAGAGCCTCGGTCAGGAACTCTTGCTCAATTTTGACAGCGTCAACGATAACATCC 2245281
Query 74697 TTGTGAATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAA 74755
| | | | |||| || | || ||||| ||||||| | || | || ||| ||
Sbjct 2245282 TGGACCACTTGTTTGCTTGGTCGATT---CCTCAAGTGAGAGAATAGGAGACA-GGCGAA 2245337
Query 74756 CTCCTGATGCGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCA 74814
|| ||| ||| || || |||| || | || || || || | || || ||||
Sbjct 2245338 ATCAGTATG-GAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAGACCTGGCA 2245396
Query 74815 TAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTT 74874
| || ||||||||||||||||| ||||||| | |||| ||| ||||||||||| ||||
Sbjct 2245397 TGAGGCCACGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCTT 2245456
Query 74875 CGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908
|||| || ||||| ||||| ||||| |||||
Sbjct 2245457 CGACGGCAGCGAAGGCAACAAGACGTTGAGCGAA 2245490
>seq2
Length=5100555
Score = 107 bits (118), Expect = 2e-18
Identities = 182/264 (69%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 152061 GCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGC 152120
|||||| || || || | |||||| | |||| ||| |||||| ||||| ||||||||
Sbjct 1460329 GCCACCGGCGAGACGTGATCCAAAATTTCCACTGGGTTCGAGGCAGTTGACGTTGTTGGA 1460388
Query 152121 GCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTG 152180
|| ||||| | || || | | || || |||||| ||||||| |||||
Sbjct 1460389 ACCGACGAAGGTTTGTGCGAGGCCGATGATTGTTTGCTGCAGCGAAACTTCACCATGGTG 1460448
Query 152181 ATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAG 152240
||||| || ||||| | |||||| || ||||| | |||||| |||| | |
Sbjct 1460449 ATACGAAGTTTGCTCGGAGATGTAACCAGCCAATTCAATGACCTTCTGGTCCTTGAGAAT 1460508
Query 152241 GTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300
||||||||||| ||| |||||||| || || || || || ||||| ||||| | ||
Sbjct 1460509 GTTCTTCTTGAAACATGCGTAAATGACTTTTCGTTGACCAGGCTTCAATCCGTCAATAAC 1460568
Query 152301 GTGAGGAATCGAACGCTTGATGTC 152324
| || || || ||| || ||||
Sbjct 1460569 GGAGGGGATGGACCGCATGTTGTC 1460592
Score = 89.7 bits (98), Expect = 6e-13
Identities = 196/292 (67%), Gaps = 4/292 (1%)
Strand=Plus/Plus
Query 117311 ATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTC 117370
|| ||||||| || ||||| || |||||| || ||||| | || || | ||||||
Sbjct 1460303 ATATAACGAGGACTAGCAGCGTCTGAGCCACCGGCGAGACGTGATCCAAAATTTCCACTG 1460362
Query 117371 GGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTA 117430
|| || | | ||| | |||||||| || || ||| |||| || | | || || ||
Sbjct 1460363 GGTTCGAGGCAGTTGACGTTGTTGGAACCGACGAAGGTTTGTGCGAGGCCGATGATTGTT 1460422
Query 117431 CCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGC 117490
|| || | |||||||||||||||| || ||||| | | ||| || ||||
Sbjct 1460423 TGCTGCAGCGAAACTTCACCATGGTGATACGAAGTTTGCTCGGAGATGTAACCAGCCAAT 1460482
Query 117491 TGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGC 117548
| | |||||| ||| ||| | ||||||||||| || || ||||| || || |
Sbjct 1460483 TCAATGACCTTCTGGTCCTTGAGA--ATGTTCTTCTTGAAACATGCGTAAATGACTTTTC 1460540
Query 117549 GCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600
| |||| ||||||| || || ||| ||||| || ||| || ||||
Sbjct 1460541 GTTGACCAGGCTTCAATCCGTCAATAACGGAGGGGATGGACCGCATGTTGTC 1460592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215753752800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |