Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq12 253 2e-62 seq33 167 3e-36 seq35 136 5e-27 seq2 98.7 1e-15 seq3 89.7 6e-13 >seq12 Length=4789767 Score = 253 bits (280), Expect = 2e-62 Identities = 894/1382 (65%), Gaps = 42/1382 (3%) Strand=Plus/Plus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||||| |||||||| ||||||||| || | |||||| | || || || || ||||| Sbjct 3334399 GTGTACGGCTCAAAGCACTCGTTGTTACCCAAGATCTGGGAAGTACTGGCGGTAGGCATT 3334458 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGAC 80514 || | || | ||| || || | ||| ||| |||||| | ||| || || | Sbjct 3334459 GGTGCTACTAGCAGACTGTTGCGAATGCCATGCGCCTTGATTTGCTCCTTCAGCGATGCC 3334518 Query 80515 CAA----AAATCAACCCCAACGCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCC 80568 || ||| | | || ||| | || ||||||||| ||||| ||||| | Sbjct 3334519 CAGTCCCAAAG--ATCGGAAGGCT-TCACATTCCACATGTCAAACTGCAGAATGCCTTGA 3334575 Query 80569 GACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGAC 80628 || | ||||| || || | || ||| ||||| | | |||||| ||||| || Sbjct 3334576 GATACAGGAGAGCCTTCGTATGTGGAGTATGGGCCTTGCTCCTTGGCAAGCTCCATGGAA 3334635 Query 80629 TCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGT 80688 | | || || || || ||||| |||||| | |||||||| | || |||| Sbjct 3334636 GCAGTGAGAGCGGCATGGTAAATTGTCTCAAATATCTGCTTGTTCAGCTCTCGTGCCTCA 3334695 Query 80689 GGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATG 80748 || ||||| | || || | | |||| | || || || ||||||||||||| Sbjct 3334696 GGAGACTCGAAAGGCAGGCGAAGGGCTAGGAACGCATCTGCAAGACCCTGAACGCCGACA 3334755 Query 80749 GCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTA 80808 | || || | ||||||| |||| || || ||||||| ||||| |||| Sbjct 3334756 CCAATGGGCCTGTGGCGCATGTTGCTGTTCTGTGCTTCCGGAACGGGGTAGTAGTTGACG 3334815 Query 80809 TCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAG 80868 ||||||| |||| ||| || |||||| |||||||| || || || || ||| Sbjct 3334816 TCGATGATCTTATTCAAGTTTCGAACAACAACTTCGGTAACATCGTGCAGCTTTTGGAAG 3334875 Query 80869 TCGAA------TTGGTTCCCCTTCACAAATGCCGG-AAGGCTCAGGGACGCCAGATTGCA 80921 || | || || | |||||| | ||| ||||| ||| || |||| ||||| Sbjct 3334876 TCATAGCAGCCTTCATTGTAGTCCACAAAGGACGGCAAGGC-CAGCGAAGCCAAGTTGCA 3334934 Query 80922 CACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTT 80981 ||||| ||||| || | | |||||| ||| |||||||| | ||| || Sbjct 3334935 GACGGCGACCTCATCGGGGGCGCAGTACTCGATGATCTCCGTGCAGAGATTGGAGCTGCG 3334994 Query 80982 AATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTA 81041 || || || || || |||||||| |||| |||||||| || |||||| |||| | Sbjct 3334995 GATGGTGCCAAGATTCTTCTGGTTGCTCTTGCGATTGCAAGCATCTTTGTAGAGCATGAA 3335054 Query 81042 CGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGAC 81101 ||| | ||||| || ||| | || |||||||| | ||||| || | ||||||| Sbjct 3335055 AGGGTTTCCGGTTTCAGTCTGGGCCTCTAGGATGGCATACCAAAGCTTCTGTGCCTTGAT 3335114 Query 81102 CACCTTGCGGAATTTGCCTTCGGC--CACATACTTGGCGTAAGCTTCGTCGAACTTGGCA 81159 |||||| ||| || || | ||||||| |||| | ||||||| | || Sbjct 3335115 GGTCTTGCGACCCTTG--TTGAGCTTCTCATACTTTTCGTAGAGAGCCTCGAACTCGTCA 3335172 Query 81160 CCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTC 81218 |||| | ||| ||| ||| | || || ||||| || |||||||| ||| ||| || Sbjct 3335173 CCGTAGCAGT-CAGCCAGGCCGGGACATTCGTTGGGACACATCAGAGTCCAATCGCCGTT 3335231 Query 81219 GTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCA 81278 || || ||| ||||||||| ||||| ||||| |||||| ||| || || || Sbjct 3335232 CTTTTCAACACGCTTCATGAAGAGATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGC 3335291 Query 81279 GCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATG 81338 ||| | || || | || ||||| || | || | || || | | ||||||||| Sbjct 3335292 GCGAACTTCTTCCTTGCCATGGTTCTTTCGGAGGTCCATGAACTCGAACACGTCCGCATG 3335351 Query 81339 CCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTA 81395 ||| ||||| || || | |||| | || ||| |||||| || | || || Sbjct 3335352 CCAAGGCTCAAGGTAGATTGCGAAAGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATA 3335411 Query 81396 ACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGT 81455 ||| ||||| || || || |||| ||| || |||| ||| | || || || || Sbjct 3335412 ACGAGCAGTGTTATTGAAGACTCGCAGCATGGGAATGACACCGTTGGAAGTGCCATTGGT 3335471 Query 81456 ACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGA 81515 ||| |||| || || |||| || | | ||| || || || ||||| | Sbjct 3335472 GCCCGCGATGTATGAACCGGTGGCACGGATACGGTGGATGTTGAGGCCAATACCACCAGC 3335531 Query 81516 CCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTT 81575 | ||| || ||| ||||| || | ||| || ||||| ||||| ||||| || | Sbjct 3335532 CATCTTGGAGATCATTGCACAGGTCTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATC 3335591 Query 81576 TTTCATGTC-------AAGCAAGAA-ACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCA 81627 |||||||| ||||| ||| |||| |||| ||||||| | ||| ||| Sbjct 3335592 CTTCATGTCGACTAGGAAGCATGAAGACAG-TTGA-GCCTGAGGG------GTGCCCGCA 3335643 Query 81628 TTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCC 81687 ||||| || ||||| | || || ||||| | | | ||||||| || |||||||| Sbjct 3335644 TTGAAGAGGGTTGGCGAGGCATGTGTGAAAAACTTGCTGGACATCAAGTTGTAGGTTTCA 3335703 Query 81688 TTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGG 81747 |||| || || || ||| || ||||||| ||| |||||||| | ||||| |||| Sbjct 3335704 ATGACTCGCTCAACATTGTCTCCCCAGATACCGACAGCAACACGCATGATCATGTGCTGG 3335763 Query 81748 GG 81749 || Sbjct 3335764 GG 3335765 >seq33 Length=3634720 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || ||||| |||||||||||| Sbjct 1474474 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCC 1474415 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| | || ||||| ||||||||||| || || ||||||||| Sbjct 1474414 GATACCATCGATAACGTAAAGTCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAG 1474355 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| | ||||| | ||| || || | ||||| || Sbjct 1474354 CAGCGACTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGAACGCTCTCGGACTACAAC 1474295 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || ||||| ||| | || ||||| ||||| Sbjct 1474294 ATTCAGAAGGAGTCTACCCTCCATCTCGTCCTCCGCCTTCGTGGTGG 1474248 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || |||||||| ||||| Sbjct 1474702 ATGCAGATCTTCGTAAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 1474643 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| | || || ||||||||||||||||| || ||||||||| Sbjct 1474642 GATACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 1474583 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| |||||||||| || ||||| | ||||| || Sbjct 1474582 CAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAAC 1474523 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| |||||||| | || | || || || ||||| Sbjct 1474522 ATCCAGAAGGAATCTACTCTTCACTTGGTTCTCCGACTCCGTGGTGG 1474476 Score = 163 bits (180), Expect = 3e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || || |||||||| ||||| |||| || | || | ||| | Sbjct 1474906 ACTGGAAAGACCATCACCCTTGAGGTGGAGTCTTCGGATACTATCGACAACGTCAAGTCG 1474847 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||||||||| |||||||||||||| || || |||||||| ||| Sbjct 1474846 AAGATCCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGCGCCTGATCTTTGCTGGCAAG 1474787 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| || ||||| | ||||| || |||| ||||| ||||| |||||| Sbjct 1474786 CAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTTCAT 1474727 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | |||||||| || || Sbjct 1474726 CTCGTCCTCCGTCTTCGTGGCGG 1474704 Score = 152 bits (168), Expect = 6e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||| ||||| ||||| | || || ||||| | Sbjct 1474246 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATTACGTTGGAAGTAGAGTCGTCT 1474187 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || |||||||| |||||||| || || ||||||||| Sbjct 1474186 GACACAATCGACAACGTAAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAG 1474127 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||||| || || ||||||||||| || || || | ||| ||||| ||| ||||| || Sbjct 1474126 CAACGTCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGC-GACTACAA 1474068 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || || || ||||| | ||||| ||||| || || Sbjct 1474067 CATCCAGAAGGAGTCTACGCTCCACTTAGTCCTCCGTCTGCGCGGCGGCCA 1474017 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27408 GCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGA 27467 |||||| ||||| ||||| ||||||||||| || ||||||||| | | || || Sbjct 2337812 GCAAATATTTGTGAAGACTAAGACCGGCAAGACAATAACTCTTGAGTGTCACCCATCAGA 2337753 Query 27468 TAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527 | || | ||| | ||| ||||||||| |||||||| || ||||| ||||||||||| Sbjct 2337752 CACGATCGACAATGTCAAGAGTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAGCA 2337693 Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 || || || ||||| || ||||| | || |||| Sbjct 2337692 ACGACTGATCTTTGCAGGAAAGCAGTTGGAAGATG 2337658 >seq35 Length=2560152 Score = 136 bits (150), Expect = 5e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| ||||| || ||||| || |||||||| || || ||||| ||||| Sbjct 153336 ATCATGCAGATCTTCGTCAAAACCCTTACGGGGAAGACTATCACCCTCGAGGTGGAGTCT 153277 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || || || ||||||||||| || || |||||| Sbjct 153276 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGAC 153217 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || ||||| | || || || || ||||| |||||||| | || |||||| | || || Sbjct 153216 CAACAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTATCTGATTAC 153157 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| || ||| | || || || ||||||| || || || Sbjct 153156 AACATTCAGAAGGAGTCGACTTTGCACCTGGTGCTGCGTCTACGAGGAGG 153107 >seq2 Length=5100555 Score = 98.7 bits (108), Expect = 1e-15 Identities = 199/293 (68%), Gaps = 2/293 (1%) Strand=Plus/Minus Query 31953 AGATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGT 32012 ||| | || ||||||||| || ||| ||||| | |||||| || || || || Sbjct 1460593 AGACAACATGCGGTCCATCCCCTCCGTTATTGACGGATTGAAGCCTGGTCAACGAAAAGT 1460534 Query 32013 GATATACGCCTGCCTCAAGAAGAACCTG-TCGAGTGACATGAAGGTGGCGCAGCTGTCGG 32071 || ||||| || ||||||||||| | || || ||| |||||| | || | | Sbjct 1460533 CATTTACGCATGTTTCAAGAAGAACATTCTCAAG-GACCAGAAGGTCATTGAATTGGCTG 1460475 Query 32072 GCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTG 32131 | ||| | | |||||||| | |||||||| || || | ||||| ||| || || Sbjct 1460474 GTTACATCTCCGAGCAAACTTCGTATCACCATGGTGAAGTTTCGCTGCAGCAAACAATCA 1460415 Query 32132 TCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGAC 32191 || ||| || || | ||| |||||| | || ||| | |||| ||||| || |||| Sbjct 1460414 TCGGCCTCGCACAAACCTTCGTCGGTTCCAACAACGTCAACTGCCTCGAACCCAGTGGAA 1460355 Query 32192 AGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 | ||||| | || |||||||||||| || ||||| || | ||||| ||| Sbjct 1460354 ATTTTGGATCACGTCTCGCCGGTGGCTCAGACGCTGCTAGTCCTCGTTATATC 1460302 >seq3 Length=2371949 Score = 89.7 bits (98), Expect = 6e-13 Identities = 257/388 (66%), Gaps = 13/388 (3%) Strand=Plus/Minus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGATGAAT--CGTGG-GTCGTCGTTTGGTCAGCGT 64719 || |||||||| |||||||| || ||||| | | | ||| | || | ||| ||| Sbjct 2245538 AAGAAGGCTGACTGGGCCATTCGATGGATTACCGACAAGAAGTCTACCTTCGCTCAACGT 2245479 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 || | || || || || ||||| || ||||| || | || ||| || ||| Sbjct 2245478 CTTGTTGCCTTCGCTGCCGTCGAAGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATCTTC 2245419 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||| | || ||||| ||||| ||||||||||| | || || |||||||| ||||| || Sbjct 2245418 TGGTTGAAGAAGCGTGGCCTCATGCCAGGTCTCACATTCTCCAACGAGCTCATCTCGCGA 2245359 Query 64840 GACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAG----GACAA 64895 |||||||| ||||| || || || | ||| ||| ||| | | | ||| | Sbjct 2245358 GACGAGGGTCTCCATACTGATTTCGCCTGTCTCCTATTCTCTCACTTGAGGAATCGACCA 2245299 Query 64896 ACCATCACATG-GGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAAT 64954 | || ||| | || | | | || ||| || | ||||| ||||||| | || | Sbjct 2245298 AGCA-AACAAGTGGTCCAGGA-TGTTATCGTTGA---CGCTGTCAAAATTGAGCAAGAGT 2245244 Query 64955 TCATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGT 65014 || | || | || || || ||| |||| | |||||| | || |||||| |||| Sbjct 2245243 TCCTGACCGAGGCTCTGCCATGTGGTCTTCTTGGCATGAACGCGACCCTGATGAAGCAGT 2245184 Query 65015 ATATCGAATTTGTAGCAGATCGCCTGCT 65042 ||||||| || || || ||||| || || Sbjct 2245183 ATATCGAGTTCGTTGCCGATCGACTCCT 2245156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310143360320