Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq12 82.4 7e-11 >seq12 Length=4789767 Score = 82.4 bits (90), Expect = 7e-11 Identities = 192/284 (68%), Gaps = 12/284 (4%) Strand=Plus/Plus Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTT--C 34378 ||| |||||||||||||| | |||| || || || || || ||||| | || || | Sbjct 3896466 GGGCGTGAAGATCTGGGATGGCAACGGCTCCCGCGAGTTCCTTGACAACCTAGGATTGAC 3896525 Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438 ||| || ||||||||||| | || || ||||| || ||||||||| ||||||| || Sbjct 3896526 CCA--CCGTAAGGAGGGCGACCTTGGACCCGTCTATGGCTTCCAGTGGCGACACTTCGGC 3896583 Query 34439 GCGGAGTATCGGGGGAGCG-AAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTA 34497 || || || || || ||| | | ||||| | || || || | |||||||| | | Sbjct 3896584 GCCGACTA-CGTGGATGCGTCAACTGACTACACCGGCCAAGGCGTCGACCAGCTTGCGGA 3896642 Query 34498 CGTGATCGACACCTTGAAGCGGAACCCT---GATGACAGAAGGATCGTGATGTGCGCGTG 34554 ||| || ||| || ||| ||| ||| | ||| |||| | | ||| || Sbjct 3896643 CGTCATACACAAGCTGCGTACGAATCCTTACGATCGCCGAATGATC---CTTTCCGCCTG 3896699 Query 34555 GAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACA 34598 ||||||| || | ||| ||||| | | || ||||| |||| Sbjct 3896700 GAACCCGCGAGACTTGCCTAAGATGGTGTTGCCGCCGTGTCACA 3896743 Score = 82.4 bits (90), Expect = 7e-11 Identities = 192/284 (68%), Gaps = 12/284 (4%) Strand=Plus/Minus Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806 |||| ||||| || | | ||||| ||| | || ||||||||| ||| | | || Sbjct 3896743 TGTGACACGGCGGCAACACCATCTTAGGCAAGTCTCGCGGGTTCCAGGCGGAAAG---GA 3896687 Query 6807 TCCTTCTGTCATC---AGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCG 6863 || ||| | ||| ||| ||| || ||| || |||| | |||||||| Sbjct 3896686 TCATTCGGCGATCGTAAGGATTCGTACGCAGCTTGTGTATGACGTCCGCAAGCTGGTCGA 3896627 Query 6864 CTCCCTGTCCCGAATAGTCCGCTT-CGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCAC 6922 | || || || | ||||| | | ||| || || || || || || ||||||| |||| Sbjct 3896626 CGCCTTGGCCGGTGTAGTCAGTTGACGCATCCACG-TAGTCGGCGCCGAAGTGTCGCCAC 3896568 Query 6923 TGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGG--AACCCCCGCTTGT 6980 ||||| || ||||| || || | ||||||||||| || |||| || || | |||| Sbjct 3896567 TGGAAGCCATAGACGGGTCCAAGGTCGCCCTCCTTACGG--TGGGTCAATCCTAGGTTGT 3896510 Query 6981 CCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCC 7024 | || || || || || |||| | |||||||||||||| ||| Sbjct 3896509 CAAGGAACTCGCGGGAGCCGTTGCCATCCCAGATCTTCACGCCC 3896466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262198281920