Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq12 82.4 7e-11
>seq12
Length=4789767
Score = 82.4 bits (90), Expect = 7e-11
Identities = 192/284 (68%), Gaps = 12/284 (4%)
Strand=Plus/Plus
Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTT--C 34378
||| |||||||||||||| | |||| || || || || || ||||| | || || |
Sbjct 3896466 GGGCGTGAAGATCTGGGATGGCAACGGCTCCCGCGAGTTCCTTGACAACCTAGGATTGAC 3896525
Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438
||| || ||||||||||| | || || ||||| || ||||||||| ||||||| ||
Sbjct 3896526 CCA--CCGTAAGGAGGGCGACCTTGGACCCGTCTATGGCTTCCAGTGGCGACACTTCGGC 3896583
Query 34439 GCGGAGTATCGGGGGAGCG-AAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTA 34497
|| || || || || ||| | | ||||| | || || || | |||||||| | |
Sbjct 3896584 GCCGACTA-CGTGGATGCGTCAACTGACTACACCGGCCAAGGCGTCGACCAGCTTGCGGA 3896642
Query 34498 CGTGATCGACACCTTGAAGCGGAACCCT---GATGACAGAAGGATCGTGATGTGCGCGTG 34554
||| || ||| || ||| ||| ||| | ||| |||| | | ||| ||
Sbjct 3896643 CGTCATACACAAGCTGCGTACGAATCCTTACGATCGCCGAATGATC---CTTTCCGCCTG 3896699
Query 34555 GAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACA 34598
||||||| || | ||| ||||| | | || ||||| ||||
Sbjct 3896700 GAACCCGCGAGACTTGCCTAAGATGGTGTTGCCGCCGTGTCACA 3896743
Score = 82.4 bits (90), Expect = 7e-11
Identities = 192/284 (68%), Gaps = 12/284 (4%)
Strand=Plus/Minus
Query 6747 TGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGA 6806
|||| ||||| || | | ||||| ||| | || ||||||||| ||| | | ||
Sbjct 3896743 TGTGACACGGCGGCAACACCATCTTAGGCAAGTCTCGCGGGTTCCAGGCGGAAAG---GA 3896687
Query 6807 TCCTTCTGTCATC---AGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCG 6863
|| ||| | ||| ||| ||| || ||| || |||| | ||||||||
Sbjct 3896686 TCATTCGGCGATCGTAAGGATTCGTACGCAGCTTGTGTATGACGTCCGCAAGCTGGTCGA 3896627
Query 6864 CTCCCTGTCCCGAATAGTCCGCTT-CGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCAC 6922
| || || || | ||||| | | ||| || || || || || || ||||||| ||||
Sbjct 3896626 CGCCTTGGCCGGTGTAGTCAGTTGACGCATCCACG-TAGTCGGCGCCGAAGTGTCGCCAC 3896568
Query 6923 TGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGG--AACCCCCGCTTGT 6980
||||| || ||||| || || | ||||||||||| || |||| || || | ||||
Sbjct 3896567 TGGAAGCCATAGACGGGTCCAAGGTCGCCCTCCTTACGG--TGGGTCAATCCTAGGTTGT 3896510
Query 6981 CCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCC 7024
| || || || || || |||| | |||||||||||||| |||
Sbjct 3896509 CAAGGAACTCGCGGGAGCCGTTGCCATCCCAGATCTTCACGCCC 3896466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448262198281920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |