Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq33 161 2e-34 seq35 143 6e-29 seq2 120 7e-22 seq12 84.2 5e-11 >seq33 Length=3634720 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| || || | ||||||||| || || || |||||||| || || | ||||| Sbjct 1474481 ACGGAGTCGGAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGT 1474540 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| |||||||| | || || ||||| || || | ||| Sbjct 1474541 TCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATTCC 1474600 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||||| |||||||| || || || ||||| || Sbjct 1474601 CTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCAAG 1474660 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| |||||||| || | |||||| Sbjct 1474661 GGTGATGGTCTTGCCGGTGAGGGTCTTTACGAAGATCTGCAT 1474702 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || || || || ||||| || || ||||| || |||| || || Sbjct 1474253 ACGAAGGCGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGCGT 1474312 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || |||| ||||||||| |||||||| || || || ||||| || || | || Sbjct 1474313 TCGACCGTCCTCCAACTGCTTGCCCGCGAAGATGAGTCGCTGCTGGTCTGGTGGGATGCC 1474372 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| || ||||| || ||||| |||||||| || || ||||||||||| Sbjct 1474373 CTCCTTGTCTTGAATCTTGGACTTTACGTTATCGATGGTATCGGATGACTCAACCTCGAG 1474432 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||||||| || ||||| ||||| || || | |||||| Sbjct 1474433 AGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1474474 Score = 158 bits (174), Expect = 3e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || ||||| |||||||| || |||||||| || || | ||||| Sbjct 1474709 ACGAAGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 1474768 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| || ||||| ||||| || ||||| || |||| ||| Sbjct 1474769 TCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGAATTCC 1474828 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||||| ||||| || || || || ||||| || Sbjct 1474829 CTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATAGTATCCGAAGACTCCACCTCAAG 1474888 Query 211073 AGTGATCGTCTTTCCCGTGA 211092 ||||| |||||||| |||| Sbjct 1474889 GGTGATGGTCTTTCCAGTGA 1474908 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || ||||| || |||||||| || || ||||| | || ||| Sbjct 1474035 AGGACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTCT 1474094 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || ||||||||||| ||||| ||||| || || | || ||||| ||| Sbjct 1474095 TCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATCC 1474154 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| |||||||| || || || | || || ||| Sbjct 1474155 TGAATCTTGGACTTTACGTTGTCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGTC 1474214 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| || || | |||||| Sbjct 1474215 TTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 1474246 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||| |||||||||| |||||| ||||| ||||| || ||||| ||||| || |||| || Sbjct 2337653 CCTACCATCTTCCAACTGCTTTCCTGCAAAGATCAGTCGTTGCTGGTCTGGTGGAATACC 2337712 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || || || || || || ||||| ||||| || | | ||| || Sbjct 2337713 TTCCTTGTCTTGAATTTTACTCTTGACATTGTCGATCGTGTCTGATGGGTGACACTCAAG 2337772 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||| || ||||| || || |||||| ||||| Sbjct 2337773 AGTTATTGTCTTGCCGGTCTTAGTCTTCACAAA 2337805 >seq35 Length=2560152 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| | ||| ||||| || || ||||| ||||| | ||||| | || || Sbjct 153122 AGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGATAGGGTTCGGCCGTCC 153181 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | || |||||||| || || | || |||||||| Sbjct 153182 TCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGGATGCCCTCCTTGTCT 153241 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || |||||||| ||||| ||| Sbjct 153242 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 153301 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || || || || | |||||| Sbjct 153302 TTCCCCGTAAGGGTTTTGACGAAGATCTGCAT 153333 >seq2 Length=5100555 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||| || | ||||| |||| ||| || || ||||| || Sbjct 3306736 TTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAATC 3306677 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||||||||||| ||||| | || ||||| || ||||| || ||||| || ||| Sbjct 3306676 AATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGTCG 3306617 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| | |||||| ||||| ||||| |||||||| || || Sbjct 3306616 ATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAA 3306558 >seq12 Length=4789767 Score = 84.2 bits (92), Expect = 5e-11 Identities = 190/279 (68%), Gaps = 14/279 (5%) Strand=Plus/Plus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 |||| ||||| ||||||||||| | ||||| ||||||||||| ||||| || Sbjct 3335002 CCAAGATTCTTCTGGTTGCTCTTGCGATTGCAA---GCATCTTTGTAGAGCATGAAAGGG 3335058 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 |||| |||| || ||| | || ||| || |||||||| ||| || || ||| Sbjct 3335059 TTTCCGGTTTCAGTCTGGGCCTCTAGGATGGCATACCAAAGCTTCTGTGCCTTGATGGTC 3335118 Query 178205 TTTTTGGCTTTTCCTTCA--TTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCAT 178262 || | || || | ||||| ||||||| |||||| ||||||| || || | Sbjct 3335119 TTGCGACCCTTG--TTGAGCTTCTCATACTTTTCGTAGAGAGCCTCGAACTCGTCACCGT 3335176 Query 178263 AGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGT-CTTCC 178321 || ||| | || |||||| || ||||| || | ||| |||| | |||| ||| Sbjct 3335177 AGCAGTCAGCCAGGCCGGGACATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTT-- 3335234 Query 178322 TTCA-CTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGC 178359 |||| | || ||||||||||| |||| |||| | ||| Sbjct 3335235 TTCAACACGCTTCATGAAGAGATCAGGAATCCACAGGGC 3335273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151465341140