Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq35 109 4e-19
seq33 89.7 3e-13
>seq35
Length=2560152
Score = 109 bits (120), Expect = 4e-19
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| |||||||| ||||| || || ||||| ||||| || || || |
Sbjct 153333 ATGCAGATCTTCGTCAAAACCCTTACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCC 153274
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || | | ||||| || || | |||||||| ||
Sbjct 153273 GACACCATCGACAATGTCAAGTCCAAGA-TCCAAGACAAGGAGGGCATCCCGCCAGACCA 153215
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| || || || |||||||| || || || |||| || || || ||||||||
Sbjct 153214 ACAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTATCTGATTACAA 153155
Query 23790 CATACAAAAAGAGTCCACATTACA 23813
||| || || ||||| || || ||
Sbjct 153154 CATTCAGAAGGAGTCGACTTTGCA 153131
>seq33
Length=3634720
Score = 89.7 bits (98), Expect = 3e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || |||||||| || || |||||||||||||| ||||| || |
Sbjct 1474474 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACGATCACTCTCGAGGTTGAGTCATCC 1474415
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || | || | |||| || ||| ||||| || || | || ||||| ||
Sbjct 1474414 GATACCATCGATAACGTAAAGTCCAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAG 1474355
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||||| | || || || ||||| || |||| |||| || || | || ||||||
Sbjct 1474354 CAGCGACTCATCTTCGCGGGCAAGCAGTTGGAGGACGGTCGAACGCTCTCGGACTACAAC 1474295
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 1474294 ATTCAGAAGGAGTCTAC 1474278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009451698288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |