Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq12 230 3e-55 seq3 95.1 2e-14 >seq12 Length=4789767 Score = 230 bits (254), Expect = 3e-55 Identities = 1184/1874 (63%), Gaps = 51/1874 (3%) Strand=Plus/Plus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || ||||| || || | || || | || ||||| || |||||||| || || || ||| Sbjct 3334009 GTGAACTGGATGGGCGCAGCCGCTGCTTGAGTACGGAGGTAGTACATTCCGGTCTTAAGA 3334068 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 || || |||| ||| |||||||||||| || | ||| | | || || ||| Sbjct 3334069 CCGAGCTTCCAGCCGGCGAAATGCATGCTGGTGATCTTGCCCATAGTCGGGTCTTTCATA 3334128 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961 || || |||| |||||| ||||| ||||| || || | || || ||||| | | | Sbjct 3334129 TGGATGTTCAAGGACTGAGACTGATCAATGAAGGCACCGCGGTCGGCAGCCATCTGGACA 3334188 Query 76962 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG 77021 | || || | |||||||| | ||| ||| | | ||||||||| | || | | Sbjct 3334189 ACAGTACGCTGTGAGATTTCCCAGACAGTCTTGTAGAGGGCTTTGATATCTGCGGGGATG 3334248 Query 77022 TTTGTA---TTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTC 77078 |||| | || || | ||| || || | || || ||||| || | ||| | Sbjct 3334249 TTTGGAATGTTCTGGACGGAGCCGTTTTCAGCAATGATACGGTTCTTCATGGCGTCAGAC 3334308 Query 77079 CACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCA 77138 ||||| | | || | | | | ||||| ||| || || | || || || ||| Sbjct 3334309 CACAAGCCCATGTCAACCAGATCCTTTAGGAGCCAAGGGTTGACGACCTGGAACTCGCCA 3334368 Query 77139 GACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 77198 | | ||||| || ||| ||||| || || || || | | || ||||| ||| Sbjct 3334369 GCAAGGACTCTGCGTTGGTAGATATTGGATGTGTACGGCTCAAAGCACTCGTTGTTACCC 3334428 Query 77199 AAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 77258 || || || | |||| || || ||||| ||||| || | | ||| || | | ||| Sbjct 3334429 AAGATCTGGGAAGTACTGGCGGTAGGCATTGGTGCTACTAGCAGACTGTTGCGAATGCCA 3334488 Query 77259 TGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCC 77318 || | |||||| || || || || ||| ||||||||||| ||||| |||| | Sbjct 3334489 TGCGCCTTGATTTGCTCCTTCAGCGATGCCCAGTCCCAAAGATCGGAAGGCTTCACATTC 3334548 Query 77319 CAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGT 77378 || | || | || ||||| || | | || || || | ||||| || || Sbjct 3334549 CACATGTCAAACTGCAGAATGCCTTGAGATACAGGAGAGCCTTCGTATGTGGAGTATGGG 3334608 Query 77379 CCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAA 77437 |||| || || || || || || | || | | |||||||| || || Sbjct 3334609 CCTTGCTCCTTG-GCAAGCTCCATGGAAGCAGTGAGAGCGGCATGGTAAATTGTCTCAAA 3334667 Query 77438 AATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATA-- 77495 |||| ||| || || ||| |||| ||| | || || || | | || | || Sbjct 3334668 TATCTGCTTGTTCAGCTCTCGTGCCTCAGGAGACTCGAAAGGC--AGGCGAAGGGCTAGG 3334725 Query 77496 AAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATT 77555 || |||||||| | |||||||| || | |||||| || || || | | | ||| | Sbjct 3334726 AACGCATCTGCAAGACCCTGAACGCCGACACCAATGGGCCTGTGGCGCATGTTGCTGTTC 3334785 Query 77556 TTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACT 77615 | ||||| |||| || || || || | ||| || || ||||| | |||| |||||| Sbjct 3334786 TGTGCTTCCGGAACGGGGTAGTAGTTGACGTCGATGATCTTATTCAAGTTTCGAACAACA 3334845 Query 77616 ACTT---TAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATC--TATA----ACA 77666 |||| |||| ||| | || || | || ||| | | || || | || ||| Sbjct 3334846 ACTTCGGTAACATCGTGC---AGCTTTTGGAAGTCATAGCAGCCTTCATTGTAGTCCACA 3334902 Query 77667 AACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATAT 77726 || ||| || | || || | || || || || ||||||| | | | || Sbjct 3334903 AAGGACGGCAAGGCCAGCGAAGCCAAGTTGCAGACGGCGACCTCATCGGGGGCGCAGTAC 3334962 Query 77727 TGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTC 77786 | || ||||| || || ||||| | ||| ||||| ||||| | ||||||||| Sbjct 3334963 TCGATGATCTCCGTGCAGAGATTGGAGCTGCGGATGGTGCCAAGATTCTTCTGGTTGCTC 3335022 Query 77787 TTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCG 77846 || |||||| | || || || || || || || | ||||||||| |||| | || Sbjct 3335023 TTGCGATTGCAAGCATCTTTGTAGAGCATGAAAGGGTTTCCGGTTTCAGTCTGGGCCTCT 3335082 Query 77847 ATAATAGATTTCCAGACGACTCTAGCTTTTAT-CATAGATTTGTATCGCCTCTCT----- 77900 | || | | ||| | |||| | | | | ||| || | || | || Sbjct 3335083 AGGATGGCATACCAAA--------GCTTCTGTGCCTTGATG-GTCTTGCGACCCTTGTTG 3335133 Query 77901 --CTT-TCATA--TTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATC 77955 ||| ||||| || ||| | |||| || || || || || | ||| ||| | Sbjct 3335134 AGCTTCTCATACTTTTCGTAGAGAGCC--TCGAACTCGTCACCGTAGCAGTCAGCCAGGC 3335191 Query 77956 CAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAA 78015 | || ||||| || || ||||||| | ||| || || | | | ||| || ||||| | Sbjct 3335192 CGGGACATTCGTTGGGACACATCAGAGTCCAATCGCCGTTCTTTTCAACACGCTTCATGA 3335251 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTG 78075 |||||||||| ||||| || || | || ||||| || | | | |||||| || || Sbjct 3335252 AGAGATCAGGAATCCACAGGGCGAGGAAGAGATCACGTGCGCGAACTTCTTCCTTGCCAT 3335311 Query 78076 TATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTG 78135 |||||| || || | ||||| | | || | |||||| || || || || |||| Sbjct 3335312 GGTTCTTTCGGAGGTCCATGAACTCGAACACGTCCGCATGCCAAGGCTCAAGGTAGATTG 3335371 Query 78136 CCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAA 78195 | | | | || || || || || || || ||||| | ||| | || |||||||| | | Sbjct 3335372 CGAAAGCGCCTGGGCGCTTGTTGCCACCTTGATCCACATAACGAGCAGTGTTATTGAAGA 3335431 Query 78196 CTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCAC 78255 ||| || ||| ||||| | |||||| || || ||||| || || | || || || Sbjct 3335432 CTCGCAGCATGGGAATGACACCGTTGGAAGTGCCATTGGTGCCCGCGATGTATGAACCGG 3335491 Query 78256 TTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGC 78315 | || || ||| ||| | || || || || |||||||| || || | || | Sbjct 3335492 TGGCACGGATACGGTGGATGTTGAGGCCAATACCACCAGCCATCTTGGAGATCATTGCAC 3335551 Query 78316 AACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAAC 78375 | || | || ||||| || ||||| || ||||||||| |||||| | || || | Sbjct 3335552 AGGTCTTGAGGGTGTCGTAAATGCCCTCAATGCTGTCATCCTTCATGTCGACTAGGAAGC 3335611 Query 78376 AGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAA 78435 | ||||| |||| ||| || || ||||| || | || || || ||||| || | Sbjct 3335612 ATGAAGACAGTTGAGCCTGAGGGGTGCCCGCATTGAAGAGGGTTGGCGAGGCATGTGTGA 3335671 Query 78436 ACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTA---TGTC-CCATTGA 78491 | | || || | | ||||| |||||||| || || | |||| || | Sbjct 3335672 AAAACTTGCTGGACATCAAGTTGTAGGTTTCAATGACTCGCTCAACATTGTCTCCCCAG- 3335730 Query 78492 TGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTT 78551 || || || || |||||||| | ||| ||||| |||| ||||| |||| || Sbjct 3335731 ---ATACCGACAGCAACACGCATGATCATGTGCTGGGGTCGCTCAACGATCTTGCCATCA 3335787 Query 78552 ATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 78611 | ||| | | ||| ||| | || |||||||| ||||| ||||| | ||| |||||| Sbjct 3335788 AGTTTAAGGAGGTAGGATCTCTCTAAAGTTTTGAAACCGAAATATTGGTAGTTGAAGTCT 3335847 Query 78612 CTCTCGTAAATAAT 78625 | || || | ||| Sbjct 3335848 CGGTCATACACAAT 3335861 >seq3 Length=2371949 Score = 95.1 bits (104), Expect = 2e-14 Identities = 214/317 (68%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATT-TCACAATTCATTCCTATAAG 48028 |||| ||| |||||||| || ||||| ||||||| || | ||||| || | ||| Sbjct 2245159 AGTCGATCGGCAACGAACTCGATATACTGCTTCATCAGGGTCGCG-TTCATGCCAAGAAG 2245217 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 | ||| |||||||| || || |||||||| || || ||||||| || || || | Sbjct 2245218 ACCACATGGCAGAGCCTCGGTCAGGAACTCTTGCTCAATTTTGACAGCGTCAACGATAAC 2245277 Query 48089 CGATGTT--ACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCA 48146 || | ||| || | |||||| ||| | ||| || || | | ||| || Sbjct 2245278 --ATCCTGGACCACTTGTTTGCTTGGTCGATTCCTCAAGTGAGAGAATAGGAGACAGGCG 2245335 Query 48147 AAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGC 48206 |||||| ||| ||||| || |||| || | ||||| || ||||||||||| ||| Sbjct 2245336 AAATCAGTATGGAGACCCTCGTCTCGCGAGATGAGCTCGTTGGAGAATGTGAGACCTGGC 2245395 Query 48207 ATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCT 48266 || || ||||| || || | ||| || || | || || | || ||||| || ||| Sbjct 2245396 ATGAGGCCACGCTTCTTCAACCAGAAGATGGAAGCAAAGGCACCGCTGAAGAAGATACCT 2245455 Query 48267 TCTACGGCCGCAAATGC 48283 || ||||| || || || Sbjct 2245456 TCGACGGCAGCGAAGGC 2245472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668487399040