Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02-
10] 36 sequences; 42,868,360 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq33 129 1e-24
seq35 113 1e-19
seq2 89.7 1e-12
>seq33
Length=3634720
Score = 129 bits (142), Expect = 1e-24
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||||| ||| || | ||||||||||| || || ||||||||||| |||| | ||||
Sbjct 1474484 GAGTCGGAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCG 1474543
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
||||| || || || ||||||||||| | | ||||||||| | | |||||| ||
Sbjct 1474544 GCCATCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGGATTCCCTC 1474603
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || || || || ||||| | || | | | || ||| ||| || ||||| ||
Sbjct 1474604 CTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCCGAAGACTCGACCTCAAGGGT 1474663
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||| ||||| ||||| ||||||| ||||||
Sbjct 1474664 GATGGTCTTGCCGGTGAGGGTCTTTACGAAGATCTGCAT 1474702
Score = 105 bits (116), Expect = 2e-17
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| | || || |||||||| || ||||||||||| ||| | || | || ||
Sbjct 1474034 GAGGACTAAGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCGTC 1474093
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
||| || || || ||||||||||| | |||||||| | | ||| || ||||| ||
Sbjct 1474094 TTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCTGGTGGGATACCCTCCTTATC 1474153
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||||| || || || | || | |||| || ||||||||| | ||||| ||
Sbjct 1474154 CTGAATCTTGGACTTTACGTTGTCGATTGTGTCAGACGACTCTACTTCCAACGTAATGGT 1474213
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||| ||||| ||||||| ||||||
Sbjct 1474214 CTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 1474246
Score = 87.8 bits (96), Expect = 4e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| |||||||| || ||||| || ||||||||||| |||| | |||| |||||
Sbjct 1474718 GAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATC 1474777
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || || ||||| || | ||||||||| | | ||||| ||||| ||
Sbjct 1474778 CTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTC 1474837
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || ||||| | || | | || ||| ||| || ||||| || || ||
Sbjct 1474838 CTGGATCTTCGACTTGACGTTGTCGATAGTATCCGAAGACTCCACCTCAAGGGTGATGGT 1474897
Query 152072 TTTGCCCGTGA 152082
|| || ||||
Sbjct 1474898 CTTTCCAGTGA 1474908
>seq35
Length=2560152
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || || || | ||| ||||| || || ||||||||||| | || |||| || ||
Sbjct 153122 AGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAGATAGGGTTCGGCCGTCC 153181
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||||||||| | | ||| ||||| | || ||| || ||||| |||
Sbjct 153182 TCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCGGGATGCCCTCCTTGTCT 153241
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || |||||| | || | | |||| ||| ||| || || || || |||||
Sbjct 153242 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTC 153301
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || || || ||||||| ||||||
Sbjct 153302 TTCCCCGTAAGGGTTTTGACGAAGATCTGCAT 153333
>seq2
Length=5100555
Score = 89.7 bits (98), Expect = 1e-12
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| ||||||||||| || | | ||||| ||||| || | ||| |||||||| ||
Sbjct 3306736 TTCTGGATGTTGTAGTCAGAAAGAGTTCGGCCATCCTCCAACTGTTTTCCGGCGAAAATC 3306677
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
| | || ||||||| | ||| || ||||| ||||| ||||| || ||| | ||
Sbjct 3306676 AATCGTTGTTGGTCCGGAGGGATGCCCTCCTTATCTTGGATTTTGGACTTCACATTGTCG 3306617
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095
| |||| || ||| || || | ||| || || |||||||| ||||||||||||||
Sbjct 3306616 ATCGTGTCCGAGGACTCGACCTCCAAAGTGATGGTCTTGCCCGTCAGAGTCTTCACGAA 3306558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153820267800156
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |