Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq33 150 4e-31 seq35 132 1e-25 seq2 122 2e-22 >seq33 Length=3634720 Score = 150 bits (166), Expect = 4e-31 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| ||||| || || || Sbjct 1474699 CAGATCTTCGTAAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCGGAT 1474640 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || |||||||| || |||||||| Sbjct 1474639 ACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAG 1474580 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||||||||| || |||||||| ||||| | || || |||| || ||| || Sbjct 1474579 CGATTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATC 1474520 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || ||||| || || || |||| || Sbjct 1474519 CAGAAGGAATCTACTCTTCA-CTTGGTT 1474493 Score = 118 bits (130), Expect = 3e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| || || || | || || || || ||| Sbjct 1474243 CAGATCTTCGTCAAGACCCTCACCGGAAAGACCATTACGTTGGAAGTAGAGTCGTCTGAC 1474184 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||||||||| || || || ||||| || ||||||||| Sbjct 1474183 ACAATCGACAACGTAAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAGCAA 1474124 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||||| ||||| || | || || ||| || ||| || Sbjct 1474123 CGTCTTATCTTCGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGAGCGACTACAACATC 1474064 Query 178104 CAAAAAGAATCAACACTGCA 178123 || || || || || || || Sbjct 1474063 CAGAAGGAGTCTACGCTCCA 1474044 Score = 102 bits (112), Expect = 2e-16 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGC-TCAGA 177982 ||||| || ||||| ||| || || || || || || || ||| || | | ||||| Sbjct 2337811 CAAATATTTGTGAAGACTAAGACCGGCAAGACAATAACTCTTGAG-TGTCACCCATCAGA 2337753 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||| ||||| || ||||| || ||||| ||||| ||||| || || || |||||||| Sbjct 2337752 CACGATCGACAATGTCAAGAGTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAGCA 2337693 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGG 178082 |||||| ||||| || ||||| ||| | |||||||| ||| Sbjct 2337692 ACGACTGATCTTTGCAGGAAAGCAGTTGGAAGATGGTAGG 2337653 >seq35 Length=2560152 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || || || || || ||||||||||||||||| || ||| Sbjct 153330 CAGATCTTCGTCAAAACCCTTACGGGGAAGACTATCACCCTCGAGGTGGAGTCTTCCGAC 153271 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| || ||||| || || ||||| || ||||| || Sbjct 153270 ACCATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAACAG 153211 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||||||||| || |||||||| || || | || || | ||||| ||| | Sbjct 153210 CGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTATCTGATTACAACATT 153151 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || |||| || || Sbjct 153150 CAGAAGGAGTCGACTTTGCACCTGGT 153125 >seq2 Length=5100555 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| ||||| || || || || ||||| | ||||| || ||| ||||| || Sbjct 3306557 TTTCGTGAAGACTCTGACGGGCAAGACCATCACTTTGGAGGTCGAGTCCTCGGACACGAT 3306616 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || || || || || || || || || || |||||||||||||| |||||| | Sbjct 3306617 CGACAATGTGAAGTCCAAAATCCAAGATAAGGAGGGCATCCCTCCGGACCAACAACGATT 3306676 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || ||||||||||||||| | || ||||| | |||||| | || || ||| |||| || Sbjct 3306677 GATTTTCGCCGGAAAACAGTTGGAGGATGGCCGAACTCTTTCTGACTACAACATCCAGAA 3306736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730644778984