Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Reticulascus_20tulasneorum_20[genbank_20GCA_5F001557505.1_202016-02- 10] 36 sequences; 42,868,360 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq35 152 5e-32 seq33 127 2e-24 >seq35 Length=2560152 Score = 152 bits (168), Expect = 5e-32 Identities = 174/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || |||||||| | |||||| |||| || ||||||||||||||| || || | Sbjct 153105 CGCCTCCTCGTAGACGCAGCACCAGGTGCAAAGTCGACTCCTTCTGAATGTTGTAATCAG 153164 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | ||||| || |||| |||||||||||||||||||| |||| ||||||||||| | | Sbjct 153165 ATAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGCG 153224 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTC 41811 | | || ||||||||| ||| || ||| || | || | |||||| ||||| Sbjct 153225 GGATGCCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACTC 153282 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| | || || || || ||||| || || || ||||| ||||||||| Sbjct 153283 CACCTCGAGGGTGATAGTCTTCCCCGTAAGGGTTTTGACGAAGATCTGCATG 153334 >seq33 Length=3634720 Score = 127 bits (140), Expect = 2e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||| || ||| ||||||||| ||||| ||||||||| Sbjct 1474704 CCGCCACGAAGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1474763 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || |||||||||||||| || || ||||||||||| ||||| | |||| Sbjct 1474764 AGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGGGGA 1474823 Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778 | | |||||||||| ||| || Sbjct 1474824 ATTCCCTCCTTGTCCTGGATCTT 1474846 Score = 123 bits (136), Expect = 2e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 |||||||| ||||| |||||||||||||| || | || |||||||||||||||||||| Sbjct 1474512 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCGGCGAAG 1474571 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 |||| ||||| ||||| | ||| | | |||||||||| ||| || ||| ||| Sbjct 1474572 ATCAATCGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTCGACTT-GACGTT 1474630 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | | || || ||||| ||||| | || || || || || || || |||||||| Sbjct 1474631 GTCGATGGTATCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTTAC 1474690 Query 41851 GAAAATCTGCAT 41862 ||| |||||||| Sbjct 1474691 GAAGATCTGCAT 1474702 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || ||||| || || ||||||||||||||| ||||| || Sbjct 1474247 GCCACCACGAAGGCGGAGGACGAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGA 1474306 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || |||| || | ||||||||| ||||| || || ||||| ||||| | || Sbjct 1474307 GAGCGTTCGACCGTCCTCCAACTGCTTGCCCGCGAAGATGAGTCGCTGCTGGTCTGGTGG 1474366 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||| | ||| | || | | ||| | | || ||| ||||| | Sbjct 1474367 GATGCCCTCCTTGT-CTTGAATCTTGGACTTTACGTTATCGATGGTATCGGATGACTCAA 1474425 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || ||||| || || || || ||||| ||||| |||||||| Sbjct 1474426 CCTCGAGAGTGATCGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1474474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303791963200