Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723215.1_202016- 09-12] 893 sequences; 32,602,137 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq292 181 1e-40 >seq292 Length=28646 Score = 181 bits (200), Expect = 1e-40 Identities = 673/1045 (64%), Gaps = 10/1045 (1%) Strand=Plus/Plus Query 53804 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATC 53863 || || ||||| ||||| || |||||||| ||||| || | || || ||||| || || Sbjct 10936 TGGTTGCTCTTCTTGTTGCAGGCATCCTTGTAAAGCATATAAGGAGTCCCAGTCTCGGTC 10995 Query 53864 TGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTT 53923 || | ||||| ||||| | ||| | | ||||| | | | | ||| | Sbjct 10996 TGTGCTTCTAGGATCGCATACCACAACTTCTGGGCCTTGACCGTC--TGACGACCTCGTC 11053 Query 53924 TCTCTTTCGTATAGTGT--ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATC 53981 ||||||| ||| ||| ||| | || || || || || | |||| | | | Sbjct 11054 CCTCTTTCTCATACTGTTCATAGAGGGCATCGAATTCCTCGCCATAGACATCAGCAAGGC 11113 Query 53982 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 54041 | || |||| ||||| | || | ||| ||| || | || || ||| |||| | Sbjct 11114 CCGGTGCCTCATGAGGACAGAACAGAGTCCAGTCTTGGTTCTTCTCGACACGTCTCATGA 11173 Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101 | ||||| ||| ||||||| || ||| | || | || | | || || ||||| Sbjct 11174 ATAGATCCGGAGTCCAAAGTGCATAAAACAAGTCACGGGCGCGAACCTCTTCCTTTCCGT 11233 Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 |||||| | || | || | | | | ||| | ||||| || |||| || |||| Sbjct 11234 GGTTCTTTCTCAGGTTCAGCCAATCGAAGACATCCGCGTGCCATGGCTCCAGATAGATGG 11293 Query 54162 TCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 54221 | | || || || || || || ||||| || | || | || ||||| || | | Sbjct 11294 CAAAGGCACCGGGACGCTTATTGCCACCCTGGTCCACATAACGGGCAGTGTTGTTGAAGA 11353 Query 54222 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 54281 | | | ||| ||||| | ||||||||| | || |||||||||| |||||| ||| Sbjct 11354 CACGAAGCATGGGAATGAGACCATTGGAAGTGCCGTTGGTCCCGGCAATATAGGAACCAG 11413 Query 54282 TGGCACGAATATTACTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 | |||||||| | | | | | || || || || || || | || ||||| | || Sbjct 11414 TAGCACGAATGCAA-TGAGCGTTGAGGCCAATACCGCCAGCAGTCTTGGAGATCATAGCA 11472 Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400 || || | || || || || ||||| || || || || |||||| | | || Sbjct 11473 CAAGTCTTGAGAGTGTCGTAAATTCCCTCAATGCTGTCCTCTTTCATGTCGACCAAGAAG 11532 Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460 || |||| ||| | | ||| || ||||| || | || ||||| ||||| || Sbjct 11533 CATGAGGACAATTGAGGTTGCGGAGTGCCGGCATTGAACAGAGTTGGAGAGGCGTGGGTG 11592 Query 54461 AACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGA 54520 || || || | || | || ||||| ||||| || || || || || | ||| Sbjct 11593 AAGCACTTCTGGGACATGAGGTTGTAGGTCTCTATCGCCTTCTCGATGTCATCTCCATGG 11652 Query 54521 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT-GTTTAT 54579 || || ||||| |||||||| | |||||| || ||||| || | | |||||| | || Sbjct 11653 ATGCCAACTGCCACACGCATGAGCATGTGTTGCGGTCTCTCGGCCA-CTTGTTTGCCAAT 11711 Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639 || |||| || ||| |||||||||| || || || || || | ||| |||||||| Sbjct 11712 CTTGAGCAGATATGATCTTTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCG 11771 Query 54640 TTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAAT 54699 ||||||| || | ||||| || | ||| || | | |||| |||| ||| | Sbjct 11772 GTCGTAAACGATGGCCGAGTTCAGCTCATCAGCATGTCTCATAAC-ACATTCATACGTCT 11830 Query 54700 ACTTGAA-ATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCT 54758 || | | || || ||||| || ||| || || || |||| ||||| | | |||| Sbjct 11831 CCTGGGAGATCATAGGAGAGTGCTTCTTGTTCTTGGGGTTGATATAGTAGTAGAGATCCG 11890 Query 54759 TCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAG 54818 || ||| | ||| |||| || || | ||||| ||||| || ||||| || | | Sbjct 11891 ACACCACCGAAGAGAATTGTTTCTTAGTCTGCTTGTGGAGATTGGACACGGCGATACGCG 11950 Query 54819 CGGCTAGAATGGCATAATCCGGATG 54843 | || || ||||||||||| ||||| Sbjct 11951 CTGCGAGGATGGCATAATCGGGATG 11975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593714972582640